fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G68130 IDD14beta, IDD14alpha, ATIDD14 indeterminate(ID)-domain 14 (.1), indeterminate(ID)-domain 14 (.2)

>AT1G68130.1 CDS map

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Uncut enzymes: AatII, Acc65I, AfeI, AflII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, ApoI, AscI, AseI, AvaI, AvrII, BaeI, BalI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BglI, BmrI, BpmI, BsaHI, BsaI, BsaXI, BseRI, BsgI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, BspDI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrFI, BsrGI, BsrI, BssHII, BstAPI, BstBI, BstEII, BstF5I, BstXI, BstZ17I, Bsu36I, BtsI, Cfr10I, ClaI, DraI, DraIII, DrdI, EarI, EciI, EcoNI, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HincII, HpaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MluI, MlyI, MnlI, MscI, NaeI, , NarI, NdeI, NgoMIV, NheI, NotI, NruI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PflMI, PleI, PmeI, PmlI, PshAI, PsiI, PspOMI, PstI, PvuI, PvuII, RsrII, SacI, SalI, SapI, SbfI, ScaI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SmlI, SpeI, SphI, SspI, StuI, SwaI, TliI, TspRI, XbaI, XcmI, XhoI, XmaI
Name Recognition sequence Cut positions
AccI GT|[AC][TG]AC 331
AccII(FnuDII) CG|CG 376, 515, 670, 979
AccIII(BspMII) T|CCGGA 153, 342
AciI C|CGC 105, 135, 660, 669
AclI AA|CGTT 186
AflIII A|CPuPyGT 352, 1205
AluI AG|CT 288, 490, 807, 813, 908, 1027, 1032, 1042, 1129, 1199
AvaII G|G[AT]CC 242, 692, 705
BamHI G|GATCC 150
BfaI C|TAG 191, 932
BglII A|GATCT 218, 387
BlpI GC|TNAGC 1031
BsaAI PyAC|GTPu 208
BsaBI GATNN|NNATC 976
BsaJI C|CNNGG 228, 283, 671
BsaWI [AT]|CCGG[AT] 147, 153, 342
BsiEI CGPuPy|CG 537
BsiHKAI G[AT]GC[AT]|C 571, 1182
BsiWI C|GTACG 591
BslI CCNNNNN|NNGG 752
Bsp1286I G[GAT]GC[CAT]|C 571, 1182
BspEI T|CCGGA 153, 342
BsrDI GCAATGNN| 440
BssKI |CCNGG 139, 717
BssSI C|TCGTG 391
BstNI CC|[AT]GG 717
BstUI CG|CG 376, 515, 670, 979
BstYI Pu|GATCPy 150, 218, 387, 443
BtgI C|CPuPyGG 283, 671
BtrI CAC|GTC 1185
Cac8I GCN|NGC 449, 1115
DdeI C|TNAG 115, 852, 1030, 1159
DpnI GA-CH3|TC 80, 149, 200, 217, 386, 442, 597, 875, 970
DpnII |GATC 80, 149, 200, 217, 386, 442, 597, 875, 970
EaeI Py|GGCCPu 519, 537, 1193
EagI C|GGCCG 537
EcoO109I PuG|GNCCPy 693
Fnu4HI GC|NGC 517, 535, 629, 1137
HaeIII GG|CC 518, 536, 1192
HhaI GCG|C 377
HinP1I G|CGC 377
HindIII A|AGCTT 289
HinfI G|ANTC 113, 195, 248, 328, 397
HpaII C|CGG 138, 146, 152, 341, 1133
Hpy188I TCN|GA 78, 116, 198, 382, 412, 480, 753, 891, 1160
Hpy99I CG[AT]CG| 92, 414, 751
HpyCH4III ACN|GT 94, 588, 616, 749
HpyCH4IV A|CGT 185, 207, 333, 1184
HpyCH4V TG|CA 258, 584, 1081, 1092, 1112
MboI |GATC 80, 149, 200, 217, 386, 442, 597, 875, 970
MfeI C|AATTG 1110
MseI T|TAA 294
MslI CAPyNN|NNPuTG 527
MspA1I C[AC]G|C[GT]G 671
MspI C|CGG 138, 146, 152, 341, 1133
MwoI GCNNNNN|NNGC 454, 517, 592, 669, 1111, 1137
N.BstNBI GAGTCNNNN|N 333
NciI CC|[CG]GG 139
NcoI C|CATGG 283
NlaIII CATG| 282, 351, 623, 1019, 1204
NlaIV GGN|NCC 103, 150, 242, 345, 692, 1146
NsiI ATGCA|T 259
NspI PuCATG|Py 352, 1020, 1205
PciI A|CATGT 352, 1205
PflFI GACN|NNGTC 888
PpuMI PuG|G[AT]CCPy 693
PspGI |CC[AT]GG 717
RsaI GT|AC 205, 590, 1170
SacII CCGC|GG 671
Sau3AI |GATC 80, 149, 200, 217, 386, 442, 597, 875, 970
Sau96I G|GNCC 242, 692, 705
ScrFI CC|NGG 139, 717
SfcI C|TPuPyAG 253, 863
SnaBI TAC|GTA 208
StyI C|C[AT][AT]GG 228, 283
Taqƒ¿I T|CGA 804, 824, 972
TfiI G|A[AT]TC 195, 248, 397
TseI G|C[AT]GC 629, 1137
Tsp45I |GT[CG]AC 111, 529
Tsp509I |AATT 830, 984, 1109
Tth111I GACN|NNGTC 888
XmnI GAANN|NNTTC 409


Click here to view TAIR data

>AT1G68130.1 length:1260
ATGATAGACT ACGAGAGAAG CAATACCACC AAGAACATCA ACACCCATCA 
50
TCACAACCCT CCTCCATCTT CATCTTCCTC TGATCTTCTT CCCGACGGTA 
100
ATGGAACCGC CGTGACTCAG AAGCGGAAAC GGAGACCCGC CGGGACACCG 
150
GATCCGGAGG CGGAGGTGGT ATCTTTATCA CCAAGAACGT TACTAGAATC 
200
GGATCGGTAC GTATGTGAGA TCTGTAACCA AGGGTTTCAA AGGGACCAGA 
250
ATCTACAGAT GCATAGAAGA CGACATAAAG TTCCATGGAA GCTTCTTAAA 
300
AGAGAGACCA ACGAGGAAGT GAGGAAAAGA GTCTACGTCT GTCCGGAGCC 
350
GACATGTCTC CACCACAACC CTTGCCACGC GCTCGGAGAT CTCGTGGGAA 
400
TCAAGAAACA CTTCCGACGG AAACATAGTA ACCACAAGCA ATGGATCTGC 
450
GAGCGATGCT CAAAAGGCTA CGCAGTTCAA TCTGATTACA AAGCTCATCT 
500
CAAAACCTGT GGCACTCGCG GCCACTCCTG TGACTGCGGC CGAGTTTTTT 
550
CCAGAGTGGA AAGTTTCATA GAGCACCAAG ACACTTGCAC CGTACGCCGA 
600
TCCCAACCCT CCAACCACCG TTTACATGAG CAGCAACAAC ATACCACAAA 
650
CGCTACACAA ACCGCTTCAA CCGCGGAAAA CAACGAGAAC GGGGACCTCT 
700
CCATTGGTCC TATATTGCCT GGACATCCTT TACAAAGAAG ACAATCCCCA 
750
CCGTCGGAAC AACAACCATC CACTTTGCTC TATCCCTTCG TTACTAATGG 
800
TAGTATCGAG CTTCAGCTAC TTCCATCGAG GAATTGTGCT GATGAGACCA 
850
GCCTTAGTCT GTCTATAGGG ACAATGGATC AAAAGACAAT GTCGGAAGTT 
900
GAGAAGAAGA GCTACGAGAA GGGAGAAACG AGCCTAGAAA GAGAGGAGGC 
950
GAGAAGAGAA ACAAAGAGGC AGATCGAAAT CGCGGAATTG GAGTTTGCTG 
1000
AAGCCAAGAG AATAAGGCAA CATGCGAGAG CTGAGCTTCA CAAAGCTCAT 
1050
CTTTTTAGAG AAGAAGCAAG TAGGAGGATT AGTGCAACGA TGATGCAAAT 
1100
AACTTGCCAC AATTGCAAGC AACATTTTCA AGCTCCGGCT GCTTTGGTTC 
1150
CTCCTCCTCC TCAGACGCAT TGTACCGATG AGAGCACGTC TCTGGCCGTG 
1200
AGCTACATGT CTTCGGCGAC TACCGAAGGA GAAAAGGCGA GTGATAGAGC 
1250
ATCTTCATAG 
1300

>AT1G68130.1 longest ORF length:419
MIDYERSNTT KNINTHHHNP PPSSSSSDLL PDGNGTAVTQ KRKRRPAGTP 
50
DPEAEVVSLS PRTLLESDRY VCEICNQGFQ RDQNLQMHRR RHKVPWKLLK 
100
RETNEEVRKR VYVCPEPTCL HHNPCHALGD LVGIKKHFRR KHSNHKQWIC 
150
ERCSKGYAVQ SDYKAHLKTC GTRGHSCDCG RVFSRVESFI EHQDTCTVRR 
200
SQPSNHRLHE QQQHTTNATQ TASTAENNEN GDLSIGPILP GHPLQRRQSP 
250
PSEQQPSTLL YPFVTNGSIE LQLLPSRNCA DETSLSLSIG TMDQKTMSEV 
300
EKKSYEKGET SLEREEARRE TKRQIEIAEL EFAEAKRIRQ HARAELHKAH 
350
LFREEASRRI SATMMQITCH NCKQHFQAPA ALVPPPPQTH CTDESTSLAV 
400
SYMSSATTEG EKASDRASS
450