|
|
|
|
|
|
|
|
| Locus | Common name | Short description |
| AT1G68520 | COL6 | B-box type zinc finger protein with CCT domain (.1) |
>AT1G68520.1 CDS map
>>Show genomic map
Uncut enzymes: ApaI, AscI, EcoRI, EcoRV, HpaI, KpnI, NdeI, NotI, PacI, PstI, SacI, SalI, SpeI, XbaI, XhoI
| Name | Recognition sequence | Cut positions |
| BamHI | G|GATCC | 917 |
| BglII | A|GATCT | 1195 |
| HindIII | A|AGCTT | 723 |
| NcoI | C|CATGG | 922, 983 |
| NheI | G|CTAGC | 184 |
| PvuII | CAG|CTG | 89, 551 |
| SmaI | CCC|GGG | 932 |
| StyI | C|C[AT][AT]GG | 912, 922, 983, 1032, 1044 |
Click here to view TAIR data
>AT1G68520.1 length:1221
ATGATGAAAA GTTTGGCTAG TGCGGTTGGA GGGAAGACGG CGAGGGCATG | 50 |
TGATAGCTGC GTGAAGAGGC GGGCACGTTG GTATTGCGCA GCTGATGATG | 100 |
CCTTTCTTTG CCATGCTTGT GACGGTTCGG TCCACTCGGC AAACCCTCTT | 150 |
GCTCGTAGGC ACGAGAGAGT TCGCTTGAAA TCGGCTAGCG CCGGAAAGTA | 200 |
TCGCCATGCC TCGCCGCCTC ACCAAGCCAC GTGGCATCAG GGATTTACAC | 250 |
GTAAAGCTCG GACCCCACGT GGAGGCAAGA AGAGCCACAC GATGGTTTTT | 300 |
CATGATCTTG TGCCGGAGAT GAGCACGGAG GATCAAGCGG AGAGTTACGA | 350 |
GGTGGAAGAG CAGCTCATAT TTGAGGTGCC GGTGATGAAC TCGATGGTTG | 400 |
AGGAGCAATG CTTTAACCAA TCCCTGGAGA AACAGAATGA GTTTCCAATG | 450 |
ATGCCCTTAA GTTTCAAGAG TAGTGACGAA GAAGATGACG ACAACGCTGA | 500 |
GAGTTGTCTG AATGGTTTGT TCCCAACCGA CATGGAACTA GCTCAGTTCA | 550 |
CAGCTGACGT GGAGACTCTA CTCGGTGGAG GGGATCGAGA GTTTCATTCC | 600 |
ATAGAAGAAC TAGGGTTAGG TGAGATGTTA AAGATCGAAA AAGAGGAGGT | 650 |
GGAGGAAGAG GGAGTTGTGA CAAGAGAAGT GCATGATCAA GATGAAGGTG | 700 |
ATGAGACATC CCCATTTGAA ATAAGCTTTG ACTACGAGTA CACACACAAG | 750 |
ACCACATTCG ATGAAGGAGA AGAAGATGAG AAAGAAGACG TGATGAAGAA | 800 |
TGTGATGGAG ATGGGAGTGA ATGAGATGAG TGGTGGGATT AAAGAAGAGA | 850 |
AGAAGGAGAA GGCTCTTATG CTTAGATTGG ACTATGAATC AGTCATTTCC | 900 |
ACTTGGGGAG GCCAAGGGAT CCCATGGACC GCCCGGGTGC CATCTGAAAT | 950 |
AGACCTCGAC ATGGTTTGTT TCCCAACCCA TACCATGGGT GAAAGTGGAG | 1000 |
CAGAGGCTCA TCATCACAAC CACTTCCGCG GCCTAGGGTT ACACCTAGGA | 1050 |
GATGCTGGGG ATGGAGGAAG AGAGGCTAGG GTTTCAAGAT ACCGAGAGAA | 1100 |
AAGGAGGACA AGGTTGTTCT CCAAGAAGAT AAGGTACGAG GTACGTAAAT | 1150 |
TGAATGCAGA GAAAAGGCCT CGCATGAAAG GAAGGTTCGT CAAGAGATCT | 1200 |
TCAATTGGTG TTGCTCACTA A | 1250 |
>AT1G68520.1 longest ORF length:406
MMKSLASAVG GKTARACDSC VKRRARWYCA ADDAFLCHAC DGSVHSANPL | 50 |
ARRHERVRLK SASAGKYRHA SPPHQATWHQ GFTRKARTPR GGKKSHTMVF | 100 |
HDLVPEMSTE DQAESYEVEE QLIFEVPVMN SMVEEQCFNQ SLEKQNEFPM | 150 |
MPLSFKSSDE EDDDNAESCL NGLFPTDMEL AQFTADVETL LGGGDREFHS | 200 |
IEELGLGEML KIEKEEVEEE GVVTREVHDQ DEGDETSPFE ISFDYEYTHK | 250 |
TTFDEGEEDE KEDVMKNVME MGVNEMSGGI KEEKKEKALM LRLDYESVIS | 300 |
TWGGQGIPWT ARVPSEIDLD MVCFPTHTMG ESGAEAHHHN HFRGLGLHLG | 350 |
DAGDGGREAR VSRYREKRRT RLFSKKIRYE VRKLNAEKRP RMKGRFVKRS | 400 |
SIGVAH | 450 |