fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G68550 CRF10 cytokinin response factor 10, Integrase-type DNA-binding superfamily protein (.1.2)

>AT1G68550.1 CDS map

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Uncut enzymes: Acc65I, AccI, AccIII(BspMII), AciI, AfeI, AflIII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, ApoI, AscI, AseI, AvaI, BaeI, BalI, BamHI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BlpI, BmrI, BpmI, BsaAI, BsaBI, BsaI, BsaWI, BsaXI, BseRI, BsgI, BsiHKAI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, Bsp1286I, BspDI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrFI, BsrGI, BsrI, BssHII, BssKI, BssSI, BstAPI, BstEII, BstNI, BstXI, BstZ17I, Bsu36I, BtgI, BtrI, BtsI, Cfr10I, ClaI, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HaeIII, HgaI, HhaI, HinP1I, HpaI, HpaII, HphI, Hpy99I, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MslI, MspA1I, MspI, N.BstNBI, NaeI, , NarI, NciI, NcoI, NdeI, NgoMIV, NlaIII, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspGI, PspOMI, PstI, PvuI, PvuII, RsrII, SacI, SacII, SalI, SapI, SbfI, ScrFI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, StuI, SwaI, TliI, Tsp45I, Tsp509I, TspRI, Tth111I, XbaI, XcmI, XhoI, XmaI
Name Recognition sequence Cut positions
AatII GACGT|C 625
AccII(FnuDII) CG|CG 778
AclI AA|CGTT 687
AflII C|TTAAG 175
AluI AG|CT 58, 171, 298, 307, 439, 448, 465, 595, 888, 892, 964
AvaII G|G[AT]CC 840
AvrII C|CTAGG 325
BclI T|GATCA 786, 918
BfaI C|TAG 156, 324, 402, 534, 758, 890, 900
BglII A|GATCT 882
BsaHI GPu|CGPyC 625
BsaJI C|CNNGG 190, 325
BsiEI CGPuPy|CG 632
BslI CCNNNNN|NNGG 672, 729
BstBI TT|CGAA 829
BstF5I GGATGNN| 784, 874
BstUI CG|CG 778
BstYI Pu|GATCPy 387, 719, 882
Cac8I GCN|NGC 806, 891
DdeI C|TNAG 61, 184, 256, 268, 376, 460, 529
DpnI GA-CH3|TC 131, 386, 718, 785, 881, 917
DpnII |GATC 131, 386, 718, 785, 881, 917
Fnu4HI GC|NGC 372, 441, 963
HincII GTPy|PuAC 610
HindIII A|AGCTT 449, 466
HinfI G|ANTC 150, 826, 897
Hpy188I TCN|GA 243, 255, 528
HpyCH4III ACN|GT 20, 274, 633, 838
HpyCH4IV A|CGT 202, 511, 624, 686
HpyCH4V TG|CA 589, 961
MboI |GATC 131, 386, 718, 785, 881, 917
MseI T|TAA 48, 174, 219, 393, 950
MwoI GCNNNNN|NNGC 306, 447, 486, 645
NheI G|CTAGC 891
NlaIV GGN|NCC 180
RsaI GT|AC 276, 417
Sau3AI |GATC 131, 386, 718, 785, 881, 917
Sau96I G|GNCC 840
ScaI AGT|ACT 277
SfcI C|TPuPyAG 715
SmlI C|TPyPuAG 89, 175, 469
StyI C|C[AT][AT]GG 190, 325
Taqƒ¿I T|CGA 629, 693, 699, 765, 828, 861
TfiI G|A[AT]TC 150, 826
TseI G|C[AT]GC 372, 441, 963
XmnI GAANN|NNTTC 884


Click here to view TAIR data

>AT1G68550.1 length:975
ATGGTTGCGA TTAGAAAGGA ACAGTCTTTG AGTGGTGTTA GTAGCGAGAT 
50
TAAGAAGAGA GCTAAGAGAA ACACTCTATC GTCCCTTCCT CAAGAAACCC 
100
AACCTTTGAG GAAAGTCCGT ATTATTGTGA ATGATCCTTA TGCTACTGAT 
150
GATTCCTCTA GTGATGAGGA AGAGCTTAAG GTTCCTAAGC CAAGGAAAAT 
200
GAAACGTATC GTTCGTGAGA TTAACTTTCC TTCTATGGAA GTTTCTGAAC 
250
AGCCTTCTGA GAGTTCTTCT CAGGACAGTA CTAAAACTGA TGGCAAGATA 
300
GCTGTGTCAG CTTCTCCTGC TGTTCCTAGG AAGAAGCCTG TTGGTGTTAG 
350
GCAAAGGAAA TGGGGGAAAT GGGCTGCTGA GATTAGAGAT CCTATTAAGA 
400
AAACTAGGAC TTGGTTGGGT ACTTTTGATA CTCTTGAAGA AGCTGCTAAA 
450
GCTTATGATG CTAAGAAGCT TGAGTTTGAT GCTATTGTTG CTGGAAATGT 
500
GTCCACTACT AAACGTGATG TTTCTTCATC TGAGACTAGC CAATGCTCTC 
550
GTTCTTCACC TGTTGTTCCT GTTGAGCAAG ATGACACTTC TGCATCAGCT 
600
CTCACTTGTG TCAACAACCC TGATGACGTC TCGACCGTTG CTCCAACTGC 
650
TCCAACTCCA AATGTTCCTG CTGGTGGAAA CAAGGAAACG TTGTTCGATT 
700
TCGACTTTAC TAATCTACAG ATCCCTGATT TTGGTTTCTT GGCAGAGGAG 
750
CAACAAGACC TAGACTTCGA TTGTTTCCTC GCGGATGATC AGTTTGATGA 
800
TTTCGGCTTG CTTGATGACA TTCAAGGATT CGAAGATAAC GGTCCAAGTG 
850
CGTTACCAGA TTTCGACTTT GCGGATGTTG AAGATCTTCA GCTAGCTGAC 
900
TCTAGTTTCG GTTTCCTTGA TCAACTTGCT CCTATCAACA TCTCTTGCCC 
950
ATTAAAAAGT TTTGCAGCTT CATAG
1000

>AT1G68550.1 longest ORF length:324
MVAIRKEQSL SGVSSEIKKR AKRNTLSSLP QETQPLRKVR IIVNDPYATD 
50
DSSSDEEELK VPKPRKMKRI VREINFPSME VSEQPSESSS QDSTKTDGKI 
100
AVSASPAVPR KKPVGVRQRK WGKWAAEIRD PIKKTRTWLG TFDTLEEAAK 
150
AYDAKKLEFD AIVAGNVSTT KRDVSSSETS QCSRSSPVVP VEQDDTSASA 
200
LTCVNNPDDV STVAPTAPTP NVPAGGNKET LFDFDFTNLQ IPDFGFLAEE 
250
QQDLDFDCFL ADDQFDDFGL LDDIQGFEDN GPSALPDFDF ADVEDLQLAD 
300
SSFGFLDQLA PINISCPLKS FAAS
350