fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G68840 EDF2, RAV2, RAP2.8, TEM2, AtRAV2 TEMPRANILLO 2, RELATED TO AP2 8, ETHYLENE RESPONSE DNA BINDING FACTOR 2, related to ABI3/VP1 2 (.1.2)

>AT1G68840.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, EcoRI, HindIII, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, PvuII, SmaI, SpeI, XbaI
Name Recognition sequence Cut positions
BamHI G|GATCC 141
BglII A|GATCT 236, 988
EcoRV GAT|ATC 928
HpaI GTT|AAC 700
SacI GAGCT|C 230
SalI G|TCGAC 415, 487
StyI C|C[AT][AT]GG 764
XhoI C|TCGAG 992


Click here to view TAIR data

>AT1G68840.1 length:1059
ATGGATTCTA GTTGCATAGA CGAGATAAGT TCCTCCACTT CAGAATCTTT 
50
CTCCGCCACC ACCGCCAAGA AGCTCTCTCC TCCTCCCGCG GCGGCGTTAC 
100
GCCTCTACCG GATGGGAAGC GGCGGGAGCA GCGTCGTGTT GGATCCCGAG 
150
AACGGCCTAG AGACGGAGTC ACGAAAGCTA CCATCTTCAA AATACAAAGG 
200
TGTTGTTCCT CAGCCTAACG GAAGATGGGG AGCTCAGATC TACGAGAAGC 
250
ACCAACGAGT ATGGCTCGGG ACTTTCAACG AGCAAGAAGA AGCTGCTCGT 
300
TCCTACGACA TCGCAGCTTG TAGATTCCGT GGCCGCGACG CCGTCGTCAA 
350
CTTCAAGAAC GTTCTGGAAG ACGGCGATTT AGCTTTTCTT GAAGCTCACT 
400
CAAAGGCCGA GATCGTCGAC ATGTTGAGAA AACACACTTA CGCCGACGAG 
450
CTTGAACAGA ACAATAAACG GCAGTTGTTT CTCTCCGTCG ACGCTAACGG 
500
AAAACGTAAC GGATCGAGTA CTACTCAAAA CGACAAAGTT TTAAAGACGC 
550
GTGAAGTTCT TTTCGAGAAG GCTGTTACAC CTAGCGACGT TGGGAAGCTA 
600
AACCGTCTCG TGATACCTAA ACAACACGCC GAGAAACACT TTCCGTTACC 
650
GTCACCGTCA CCGGCAGTGA CTAAAGGAGT TTTGATCAAC TTCGAAGACG 
700
TTAACGGTAA AGTGTGGAGG TTCCGTTACT CATACTGGAA CAGTAGTCAA 
750
AGTTACGTGT TGACCAAGGG ATGGAGTCGA TTCGTCAAGG AGAAGAATCT 
800
TCGAGCCGGT GATGTTGTTA CTTTCGAGAG ATCGACCGGA CTAGAGCGGC 
850
AGTTATATAT TGATTGGAAA GTTCGGTCTG GTCCGAGAGA AAACCCGGTT 
900
CAGGTGGTGG TTCGGCTTTT CGGAGTTGAT ATCTTTAATG TGACCACCGT 
950
GAAGCCAAAC GACGTCGTGG CCGTTTGCGG TGGAAAGAGA TCTCGAGATG 
1000
TTGATGATAT GTTTGCGTTA CGGTGTTCCA AGAAGCAGGC GATAATCAAT 
1050
GCTTTGTGA
1100

>AT1G68840.1 longest ORF length:352
MDSSCIDEIS SSTSESFSAT TAKKLSPPPA AALRLYRMGS GGSSVVLDPE 
50
NGLETESRKL PSSKYKGVVP QPNGRWGAQI YEKHQRVWLG TFNEQEEAAR 
100
SYDIAACRFR GRDAVVNFKN VLEDGDLAFL EAHSKAEIVD MLRKHTYADE 
150
LEQNNKRQLF LSVDANGKRN GSSTTQNDKV LKTREVLFEK AVTPSDVGKL 
200
NRLVIPKQHA EKHFPLPSPS PAVTKGVLIN FEDVNGKVWR FRYSYWNSSQ 
250
SYVLTKGWSR FVKEKNLRAG DVVTFERSTG LERQLYIDWK VRSGPRENPV 
300
QVVVRLFGVD IFNVTTVKPN DVVAVCGGKR SRDVDDMFAL RCSKKQAIIN 
350
AL
400