fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G69570 AtDof1,10 Dof-type zinc finger DNA-binding family protein (.1)

>AT1G69570.1 CDS map

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Uncut enzymes: AatII, Acc65I, AccII(FnuDII), AccIII(BspMII), AflII, AflIII, AgeI, AhdI, AlwI, ApaI, ApaLI, AscI, AseI, AvrII, BaeI, BalI, BamHI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BglII, BlpI, BmrI, BpmI, BsaAI, BsaBI, BsaHI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsiHKAI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, Bsp1286I, BspDI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrFI, BsrGI, BssHII, BssKI, BssSI, BstBI, BstEII, BstNI, BstUI, BstXI, BstZ17I, Bsu36I, BtgI, BtrI, BtsI, Cfr10I, ClaI, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HgaI, HincII, HpaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MslI, NaeI, , NarI, NciI, NcoI, NdeI, NgoMIV, NheI, NotI, NruI, NsiI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PleI, PmeI, PmlI, PshAI, PsiI, PspGI, PspOMI, PvuI, RsrII, SacI, SacII, SalI, SapI, SbfI, ScrFI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SspI, StuI, SwaI, TliI, TspRI, Tth111I, XcmI, XhoI, XmaI, XmnI
Name Recognition sequence Cut positions
AccI GT|[AC][TG]AC 1136
AciI C|CGC 749
AclI AA|CGTT 520
AfeI AGC|GCT 1012
AluI AG|CT 387, 499, 728, 1000, 1109, 1165
AlwNI CAGNNN|CTG 266, 480, 662
Aor51HI(Eco47III) AGC|GCT 1012
ApoI Pu|AATTPy 214, 427
AvaI C|PyCGPuG 615, 1042
AvaII G|G[AT]CC 168, 807
BclI T|GATCA 306
BfaI C|TAG 9, 402, 816, 1002, 1161
BsaJI C|CNNGG 735, 781
BsaWI [AT]|CCGG[AT] 183, 381
BslI CCNNNNN|NNGG 165, 841
BsoBI C|PyCGPuG 615, 1042
BsrI ACTGGN| 664, 842
BstAPI GCANNNN|NTGC 1149
BstF5I GGATGNN| 557, 848
BstYI Pu|GATCPy 222, 508
Cac8I GCN|NGC 1187
DdeI C|TNAG 268, 533, 592, 627, 872, 974, 984, 1024
DpnI GA-CH3|TC 74, 113, 221, 239, 305, 319, 507, 622, 908
DpnII |GATC 74, 113, 221, 239, 305, 319, 507, 622, 908
EcoO109I PuG|GNCCPy 808
Fnu4HI GC|NGC 1152
HaeII PuGCGC|Py 1012
HaeIII GG|CC 558, 783
HhaI GCG|C 414, 1011
HinP1I G|CGC 414, 1011
HindIII A|AGCTT 388
HinfI G|ANTC 129, 645, 705, 797, 925, 978, 1060
HpaII C|CGG 182, 380
Hpy188I TCN|GA 111, 237, 267, 485, 591, 642, 857, 873, 975, 1119
Hpy99I CG[AT]CG| 79, 540
HpyCH4III ACN|GT 301, 481, 852, 899, 1132
HpyCH4IV A|CGT 450, 463, 519
HpyCH4V TG|CA 473, 579, 848, 1150, 1188
MboI |GATC 74, 113, 221, 239, 305, 319, 507, 622, 908
MseI T|TAA 186
MspA1I C[AC]G|C[GT]G 500
MspI C|CGG 182, 380
MwoI GCNNNNN|NNGC 1149
N.BstNBI GAGTCNNNN|N 650, 802
NlaIII CATG| 396, 885, 1186
NlaIV GGN|NCC 180, 807, 855
NspI PuCATG|Py 1187
PflMI CCANNNN|NTGG 165
PpuMI PuG|G[AT]CCPy 808
PstI CTGCA|G 474, 1151
PvuII CAG|CTG 500
RsaI GT|AC 342
Sau3AI |GATC 74, 113, 221, 239, 305, 319, 507, 622, 908
Sau96I G|GNCC 168, 807
ScaI AGT|ACT 343
SfcI C|TPuPyAG 474, 1151
SmlI C|TPyPuAG 373, 716
SphI GCATG|C 1187
StyI C|C[AT][AT]GG 735, 781
Taqƒ¿I T|CGA 996
TfiI G|A[AT]TC 129, 705, 925, 978, 1060
TseI G|C[AT]GC 1152
Tsp45I |GT[CG]AC 585
Tsp509I |AATT 65, 213, 426, 770
XbaI T|CTAGA 10, 1162


Click here to view TAIR data

>AT1G69570.1 length:1200
ATGTCTAAAT CTAGAGATAC GGAGATAAAG TTGTTTGGGA GGACAATCAC 
50
ATCTCTTTTA GATGTGAATT GTTATGATCC GTCGTCGTTG TCCCCTGTTC 
100
ACGATGTTTC TTCTGATCCA AGCAAGGAGG ATTCGTCTTC TTCTTCATCT 
150
TCTTGTTCTC CAACTATTGG ACCAATCAGG GTTCCGGTTA AAAAAAGTGA 
200
GCAAGAGAGT AACAAATTCA AAGATCCATA TATATTATCC GATCTAAACG 
250
AACCACCAAA AGCAGTATCT GAGATTTCAT CACCAAGAAG TTCCAAGAAC 
300
AACTGTGATC AACAGAGCGA GATCACAACA ACAACTACCA CAAGTACTAC 
350
ATCAGGAGAG AAATCAACGG CTCTCAAGAA ACCGGACAAG CTTATTCCAT 
400
GTCCTAGATG TGAAAGCGCA AACACCAAAT TCTGTTATTA CAACAACTAC 
450
AACGTGAACC AGCCACGTTA CTTCTGCAGG AACTGTCAGA GGTATTGGAC 
500
AGCTGGTGGA TCTATGAGGA ACGTTCCTGT TGGCTCAGGT CGTCGCAAGA 
550
ACAAAGGATG GCCTTCTTCA AACCATTACT TGCAAGTCAC TTCTGAGGAT 
600
TGTGATAATA ATAACTCGGG GACGATCCTT AGTTTCGGTT CTTCGGAGTC 
650
TTCGGTTACA GAGACTGGTA AGCATCAGTC AGGTGATACA GCAAAGATAA 
700
GTGCTGATTC AGTTTCTCAA GAAAATAAAA GCTACCAAGG GTTTCTTCCT 
750
CCGCAAGTAA TGTTACCTAA TAATTCTTCT CCTTGGCCTT ACCAATGGAG 
800
TCCAACGGGT CCTAACGCTA GTTTCTACCC TGTCCCCTTC TACTGGGGAT 
850
GCACGGTTCC GATATACCCT ACCTCAGAGA CTTCATCATG TTTAGGAAAA 
900
CGGTCAAGAG ATCAAACTGA AGGAAGAATC AATGATACTA ATACAACAAT 
950
AACTACTACA AGAGCAAGAT TGGTCTCAGA ATCTCTTAGA ATGAATATCG 
1000
AAGCTAGTAA GAGCGCTGTG TGGTCTAAGT TACCGACAAA ACCCGAGAAA 
1050
AAAACGCAAG GATTCAGTTT GTTCAATGGA TTTGACACAA AGGGAAACAG 
1100
CAACAGAAGT AGCTTGGTCT CCGAAACTTC TCACAGTCTA CAAGCAAACC 
1150
CTGCAGCGAT GTCTAGAGCT ATGAACTTCA GGGAGAGCAT GCAACAATAA 
1200

>AT1G69570.1 longest ORF length:399
MSKSRDTEIK LFGRTITSLL DVNCYDPSSL SPVHDVSSDP SKEDSSSSSS 
50
SCSPTIGPIR VPVKKSEQES NKFKDPYILS DLNEPPKAVS EISSPRSSKN 
100
NCDQQSEITT TTTTSTTSGE KSTALKKPDK LIPCPRCESA NTKFCYYNNY 
150
NVNQPRYFCR NCQRYWTAGG SMRNVPVGSG RRKNKGWPSS NHYLQVTSED 
200
CDNNNSGTIL SFGSSESSVT ETGKHQSGDT AKISADSVSQ ENKSYQGFLP 
250
PQVMLPNNSS PWPYQWSPTG PNASFYPVPF YWGCTVPIYP TSETSSCLGK 
300
RSRDQTEGRI NDTNTTITTT RARLVSESLR MNIEASKSAV WSKLPTKPEK 
350
KTQGFSLFNG FDTKGNSNRS SLVSETSHSL QANPAAMSRA MNFRESMQQ
400