fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G69580 Homeodomain-like superfamily protein (.1.2)

>AT1G69580.2 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, EcoRI, EcoRV, HindIII, HpaI, KpnI, NcoI, NdeI, NheI, NotI, SalI, SmaI, SpeI, XhoI
Name Recognition sequence Cut positions
BglII A|GATCT 351
PacI TTAAT|TAA 1009
PstI CTGCA|G 363
PvuII CAG|CTG 730
SacI GAGCT|C 601, 750
StyI C|C[AT][AT]GG 103
XbaI T|CTAGA 607


Click here to view TAIR data

>AT1G69580.2 length:1014
ATGTGTTTAT TAATGGAGAT CAACAATAAT GCCAACAATA CTAATACTAC 
50
TATTGATAAT CACAAGGCAA AGATGAGCCT TGTGTTGTCA ACGGATGCTA 
100
AGCCAAGGTT GAAATGGACT TGTGATCTTC ATCACAAATT CATCGAAGCC 
150
GTTAATCAAC TTGGAGGACC TAACAAAGCA ACACCTAAGG GTTTGATGAA 
200
GGTTATGGAG ATTCCTGGGC TTACCTTATA CCATCTCAAG AGCCATTTAC 
250
AGAAATATCG GTTAGGGAAG AGCATGAAGT TCGATGATAA CAAGCTAGAA 
300
GTTTCCTCTG CATCAGAGAA TCAAGAAGTT GAGAGTAAAA ACGATTCAAG 
350
AGATCTCCGA GGCTGCAGTG TCACCGAAGA AAACAGCAAT CCAGCTAAAG 
400
ACAGAGGGCT ACAAATCACA GAGGCTTTAC AAATGCAGAT GGAAGTTCAG 
450
AAGAAACTTC ATGAACAAAT CGAAGTTCAG AGGCATTTGC AGGTGAAGAT 
500
TGAGGCACAA GGAAAGTATC TACAGTCCGT TTTAATGAAA GCTCAACAAA 
550
CTCTCGCTGG CTACTCATCT TCAAATCTCG GCATGGATTT TGCGAGGACC 
600
GAGCTCTCTA GATTAGCTTC AATGGTGAAC AGAGGCTGTC CAAGCACTTC 
650
GTTCTCAGAG CTAACGCAAG TAGAAGAAGA AGAAGAAGGT TTCTTGTGGT 
700
ACAAGAAACC AGAAAACAGA GGAATTAGTC AGCTGAGATG TTCAGTAGAG 
750
AGCTCGTTGA CATCTTCAGA GACCTCAGAG ACAAAACTGG ATACTGACAA 
800
TAACCTTAAT AAATCGATTG AACTTCCGTT GATGGAGATC AACTCGGAAG 
850
TGATGAAGGG GAAGAAGAGA AGCATAAACG ACGTCGTTTG CGTGGAGCAG 
900
CCTCTAATGA AGAGAGCTTT TGGAGTTGAT GATGATGAGC ATTTGAAGTT 
950
GAGTTTGAAT ACTTACAAGA AAGACATGGA GGCGTGTACG AACATAGGAC 
1000
TAGGGTTTAA TTAA
1050

>AT1G69580.2 longest ORF length:337
MCLLMEINNN ANNTNTTIDN HKAKMSLVLS TDAKPRLKWT CDLHHKFIEA 
50
VNQLGGPNKA TPKGLMKVME IPGLTLYHLK SHLQKYRLGK SMKFDDNKLE 
100
VSSASENQEV ESKNDSRDLR GCSVTEENSN PAKDRGLQIT EALQMQMEVQ 
150
KKLHEQIEVQ RHLQVKIEAQ GKYLQSVLMK AQQTLAGYSS SNLGMDFART 
200
ELSRLASMVN RGCPSTSFSE LTQVEEEEEG FLWYKKPENR GISQLRCSVE 
250
SSLTSSETSE TKLDTDNNLN KSIELPLMEI NSEVMKGKKR SINDVVCVEQ 
300
PLMKRAFGVD DDEHLKLSLN TYKKDMEACT NIGLGFN
350