fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G72050 TFIIIA transcription factor IIIA (.1.2)

>AT1G72050.2 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, EcoRV, HpaI, KpnI, NcoI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, XbaI
Name Recognition sequence Cut positions
BglII A|GATCT 85, 274
EcoRI G|AATTC 397, 1071
HindIII A|AGCTT 161
NdeI CA|TATG 250
NheI G|CTAGC 307
StyI C|C[AT][AT]GG 950
XhoI C|TCGAG 268


Click here to view TAIR data

>AT1G72050.2 length:1239
ATGGCGGAAG AAGCTAAAGT TGATGTGAAG ACTTCGGCGA AGAAGGATAT 
50
ACGCAATTAT CTATGCCAGT ATTGCGGAAT CAGCAGATCT AAAAACTATC 
100
TCATCACTAA ACACATCCAA TCTCATCATC AGATGGAACT TGAAGAGGAA 
150
AGAGATGATG AAGCTTGTGA GGTTGATGAG GAGTCTTCAA GTAATCATAC 
200
TTGTCAAGAA TGTGGTGCTG AGTTTAAGAA ACCTGCTCAC TTGAAGCAGC 
250
ATATGCAGAG TCATTCGCTC GAGAGATCTT TTACTTGCTA TGTGGATGAT 
300
TGTGCTGCTA GCTATAGGAG GAAGGATCAT CTCAATAGGC ATCTTCTTAC 
350
ACATAAAGGG AAGCTCTTTA AGTGTCCGAA GGAGAACTGC AAGAGTGAAT 
400
TCTCAGTACA GGGAAATGTT GGTAGGCATG TTAAGAAATA TCATAGTAAT 
450
GACAACCGTG ATAAGGACAA TACTGGTTTG GGCGATGGTG ATAAGGACAA 
500
TACTTGTAAG GGGGATGATG ATAAGGAAAA ATCTGGTAGT GGCGGTTGTG 
550
AGAAGGAAAA TGAAGGGAAT GGCGGAAGTG GTAAGGACAA TAATGGTAAT 
600
GGCGATTCTC AGCCTGCGGA GTGTTCAACT GGTCAGAAGC AGGTTGTCTG 
650
CAAAGAAATT GGTTGTGGAA AAGCCTTTAA GTATCCTTCA CAGCTTCAAA 
700
AGCATCAGGA TTCTCATGTG AAATTAGACT CTGTGGAGGC ATTTTGTTCC 
750
GAGCCTGGGT GTATGAAGTA CTTTACCAAC GAAGAATGCC TCAAGTCACA 
800
CATAAGATCC TGTCATCAGC ACATCAACTG TGAGATATGT GGTTCTAAGC 
850
ATTTGAAAAA GAACATCAAG AGACATCTAC GGACTCATGA TGAAGATTCC 
900
TCACCAGGAG AAATCAAGTG TGAAGTTGAG GGTTGCTCTT CGACTTTCTC 
950
CAAGGCTTCT AATCTTCAGA AACACATGAA AGCAGTGCAC GATGATATAC 
1000
GTCCCTTTGT CTGTGGCTTT CCCGGTTGTG GCATGAGATT TGCTTACAAA 
1050
CATGTCAGAA ACAAGCACGA GAATTCCGGG TATCACGTAT ATACCTGCGG 
1100
TGATTTTGTC GAAACTGATG AAGATTTCAC TTCAAGACCG AGAGGTGGAC 
1150
TAAAGAGGAA ACAAGTTACT GCGGAAATGC TGGTACGAAA GAGAGTCATG 
1200
CCTCCTCGGT TTGATGCAGA AGAACACGAA ACTTGCTAG
1250

>AT1G72050.2 longest ORF length:412
MAEEAKVDVK TSAKKDIRNY LCQYCGISRS KNYLITKHIQ SHHQMELEEE 
50
RDDEACEVDE ESSSNHTCQE CGAEFKKPAH LKQHMQSHSL ERSFTCYVDD 
100
CAASYRRKDH LNRHLLTHKG KLFKCPKENC KSEFSVQGNV GRHVKKYHSN 
150
DNRDKDNTGL GDGDKDNTCK GDDDKEKSGS GGCEKENEGN GGSGKDNNGN 
200
GDSQPAECST GQKQVVCKEI GCGKAFKYPS QLQKHQDSHV KLDSVEAFCS 
250
EPGCMKYFTN EECLKSHIRS CHQHINCEIC GSKHLKKNIK RHLRTHDEDS 
300
SPGEIKCEVE GCSSTFSKAS NLQKHMKAVH DDIRPFVCGF PGCGMRFAYK 
350
HVRNKHENSG YHVYTCGDFV ETDEDFTSRP RGGLKRKQVT AEMLVRKRVM 
400
PPRFDAEEHE TC
450