Locus |
Common name |
Short description |
AT1G72360 |
AtERF73, HRE1 |
HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 1, ethylene response factor 73, Integrase-type DNA-binding superfamily protein (.1.2.3) |
>AT1G72360.1 CDS map
>>Show genomic map
Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, HpaI, KpnI, NdeI, NheI, NotI, PacI, PstI, SacI, SalI, SmaI, SpeI, XbaI, XhoI
Name |
Recognition sequence |
Cut positions |
EcoRV
| GAT|ATC |
421 |
HindIII
| A|AGCTT |
9 |
NcoI
| C|CATGG |
25 |
PvuII
| CAG|CTG |
167 |
StyI
| C|C[AT][AT]GG |
25, 94, 269 |
Click here to view TAIR data
>AT1G72360.1 length:636
ATGTCTCAAA GCTTTGAACT TTATCCATGG CTAGGCTCAG CATCAGATGG | 50 |
GAAGAAGAAA CAGAGCAGTC GGTACAAAGG AATCAGAAGA AGGCCTTGGG | 100 |
GAAGATGGGC GGCTGAGATA CGTGATCCAA TCAAAGGAGT TCGAGTTTGG | 150 |
CTCGGGACTT TCAACACAGC TGAAGAAGCT GCAAGAGCTT ATGATCTTGA | 200 |
AGCTAAGAGA ATCCGTGGAG CCAAAGCTAA GCTCAATTTC CCTAACGAAT | 250 |
CCTCTGGAAA GAGGAAAGCC AAGGCTAAGA CTGTGCAACA GGTAGAGGAG | 300 |
AATCATGAGG CTGATCTTGA TGTGGCGGTG GTAAGCTCAG CGCCTAGTAG | 350 |
TAGCTGTCTT GATTTCTTGT GGGAGGAGAA TAATCCGGAC ACGCTTCTGA | 400 |
TTGATACACA ATGGCTCGAA GATATCATCA TGGGCGATGC GAATAAGAAA | 450 |
CATGAACCTA ATGATAGTGA AGAAGCCAAC AACGTTGATG CTTCTCTGCT | 500 |
TTCTGAAGAG CTTCTTGCTT TTGAGAACCA GACCGAATAT TTCTCGCAGA | 550 |
TGCCTTTTAC GGAGGGAAAC TGTGATTCCT CAACGTCTCT GAGTAGTCTC | 600 |
TTTGATGGAG GCAATGACAT GGGTCTATGG TCCTGA | 650 |
>AT1G72360.1 longest ORF length:211
MSQSFELYPW LGSASDGKKK QSSRYKGIRR RPWGRWAAEI RDPIKGVRVW | 50 |
LGTFNTAEEA ARAYDLEAKR IRGAKAKLNF PNESSGKRKA KAKTVQQVEE | 100 |
NHEADLDVAV VSSAPSSSCL DFLWEENNPD TLLIDTQWLE DIIMGDANKK | 150 |
HEPNDSEEAN NVDASLLSEE LLAFENQTEY FSQMPFTEGN CDSSTSLSSL | 200 |
FDGGNDMGLW S | 250 |
|