fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G72570 Integrase-type DNA-binding superfamily protein (.1)

>AT1G72570.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, EcoRI, HindIII, KpnI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, XbaI
Name Recognition sequence Cut positions
BglII A|GATCT 150
EcoRV GAT|ATC 1099
HpaI GTT|AAC 226
NcoI C|CATGG 507
NdeI CA|TATG 812
StyI C|C[AT][AT]GG 507, 1056
XhoI C|TCGAG 396


Click here to view TAIR data

>AT1G72570.1 length:1248
ATGAAGAAAT GGTTGGGATT TTCATTGACA CCTCCTTTGA GAATCTGCAA 
50
TAGTGAAGAA GAAGAACTTA GGCATGACGG TTCCGATGTT TGGAGATATG 
100
ATATTAACTT TGATCATCAT CATCATGATG AAGACGTTCC AAAGGTGGAA 
150
GATCTCCTCT CAAACTCTCA TCAAACCGAG TATCCTATAA ACCATAACCA 
200
AACCAATGTC AACTGCACCA CTGTGGTTAA CAGGTTAAAC CCACCCGGTT 
250
ACCTTCTCCA CGACCAAACC GTAGTTACAC CACATTACCC GAACCTAGAT 
300
CCGAACCTTA GCAATGATTA TGGAGGTTTT GAGAGGGTCG GTTCGGTCTC 
350
GGTTTTCAAA TCTTGGTTAG AGCAAGGCAC TCCAGCATTC CCACTCTCGA 
400
GTCATTACGT TACTGAAGAG GCTGGTACGA GCAATAATAT TAGTCATTTT 
450
AGTAACGAAG AGACTGGTTA TAACACCAAT GGCTCAATGC TATCATTGGC 
500
TTTGAGCCAT GGGGCTTGTT CTGATTTGAT CAACGAATCG AATGTATCCG 
550
CACGGGTCGA AGAACCGGTT AAGGTAGATG AGAAGCGGAA GAGATTGGTT 
600
GTTAAACCTC AGGTAAAGGA ATCCGTTCCT CGGAAGTCGG TTGATAGTTA 
650
TGGACAAAGA ACTTCTCAGT ATCGTGGAGT TACAAGGCAT AGATGGACAG 
700
GGAGATATGA AGCTCACTTA TGGGATAATA GCTGTAAGAA GGAGGGACAG 
750
ACAAGGAGAG GAAGACAAGT GTATCTTGGA GGGTATGATG AGGAGGAGAA 
800
AGCAGCGAGG GCATATGATT TAGCGGCTCT GAAGTATTGG GGTCCTACCA 
850
CTCACTTAAA TTTCCCTTTG AGTAATTACG AAAAGGAGAT CGAGGAACTC 
900
AATAACATGA ATCGGCAAGA ATTTGTTGCC ATGTTGAGGA GGAATAGCAG 
950
CGGGTTTTCG AGGGGAGCTT CCGTGTATAG AGGAGTTACA AGGCATCATC 
1000
AACATGGAAG GTGGCAAGCC AGAATTGGAA GAGTTGCTGG AAACAAGGAC 
1050
TTGTACCTTG GAACATTTAG CACGCAAGAA GAAGCAGCGG AGGCGTACGA 
1100
TATCGCGGCA ATTAAATTCA GAGGCCTAAA CGCTGTAACC AATTTCGATA 
1150
TAAATAGATA TGACGTGAAG AGGATATGTT CAAGCTCAAC GATTGTTGAT 
1200
AGCGACCAGG CCAAACATTC TCCCACCAGC TCTGGCGCCG GCCACTAA
1250

>AT1G72570.1 longest ORF length:415
MKKWLGFSLT PPLRICNSEE EELRHDGSDV WRYDINFDHH HHDEDVPKVE 
50
DLLSNSHQTE YPINHNQTNV NCTTVVNRLN PPGYLLHDQT VVTPHYPNLD 
100
PNLSNDYGGF ERVGSVSVFK SWLEQGTPAF PLSSHYVTEE AGTSNNISHF 
150
SNEETGYNTN GSMLSLALSH GACSDLINES NVSARVEEPV KVDEKRKRLV 
200
VKPQVKESVP RKSVDSYGQR TSQYRGVTRH RWTGRYEAHL WDNSCKKEGQ 
250
TRRGRQVYLG GYDEEEKAAR AYDLAALKYW GPTTHLNFPL SNYEKEIEEL 
300
NNMNRQEFVA MLRRNSSGFS RGASVYRGVT RHHQHGRWQA RIGRVAGNKD 
350
LYLGTFSTQE EAAEAYDIAA IKFRGLNAVT NFDINRYDVK RICSSSTIVD 
400
SDQAKHSPTS SGAGH
450