fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G72650 TRFL6 TRF-like 6 (.1.2)

>AT1G72650.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, EcoRI, EcoRV, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, SacI, SalI, SmaI, StyI, XhoI
Name Recognition sequence Cut positions
BglII A|GATCT 698, 1722
HindIII A|AGCTT 115, 563, 1758
PstI CTGCA|G 497, 571
PvuII CAG|CTG 317
SpeI A|CTAGT 1632
XbaI T|CTAGA 682


Click here to view TAIR data

>AT1G72650.1 length:1875
ATGGGAACTG TGGTTGGAAC TGTTGAGGAC CGCAGAGATA TGTTTGAGGG 
50
CAATGCTCAG ACAAGGATCA CACCATTTTC TTCAACAAAT CAGATTGGAA 
100
ATCCTGTTGC CTACAAGCTT GTCCGGGTTT CAGGAGATGG GAGTCTAGTG 
150
CCTGCAACCG ATGAAGAAAT TTTGGAAGTC AATGACACCG ATATGCATAT 
200
TCCATCAGAT ACTTGTCAGA CTATAGGCTA CCTTGCAACC GATGAAGAAA 
250
ATGTGGAGGT CGATGAGACG GATATGCATA TTGCATCAGA TGCTTGTCAG 
300
ACTATAGGTT ACCTTCCAGC TGAAGGGATA CCTTCTCGGT TGTCCCAGAT 
350
TGAAAGTTCA GAAGCTATCA ATTCAGGTTT ATTGCATTCT GATAATGTGC 
400
AACCATATAC AGACCAGTAT AACGAGGAGA TGTTGCAAAA GGTTGAACAG 
450
GAAGAGAGGC TTGAGAATGT ACATGGATCT CAGATGCCTT CCACTCCTGC 
500
AGATGCCAAT ATCCAGTGTT CTAATGAAAA CAACTTTTTT GAGGAGGATC 
550
AAGTCCACCA TGAAGCTTTA CTGCAGGATG AATGCAAGAT GAATGAATCT 
600
GATATGATGG AACGATGCTC AAACGCAGTT GCTAGTCCAA AAGAAACTGC 
650
ATTGTCTGCT GCTGCTCAAA AACCTGATTT TTCTAGAGTT AGAGGTGAGA 
700
TCTGCTTGGA TAATTTACCG ATTAAAGCAC TGCAAGAAAC ATTCAGGGCA 
750
ACTTTTGGCC GTGATACGAC TGTTAAGGAC AAGACGTGGC TTAAAAGGAG 
800
GATTGCAATG GGACTTATTA ATTCTTGTGA TGTACCAACA ACTAACTTGA 
850
GGGTGAAAGA TAACAAGTTA ATTGGAAATC AAGAGAAGTC CAACGATGTG 
900
ACGAATGCCA TTAGAAAGGA GATGGGAGAT GACGTAAGAG CTACTAAAAT 
950
GAAAGATGCT CCATCGAGTA CTGATCATGT GAATGGACAT TCAAACGGTG 
1000
GCAACCACTA TTACGCTAGT GAGGATTATT CCAGTGAACA GAGGGCTGCA 
1050
AAACGAGTTA GGAAGCCTAC ACGAAGATAC ATTGAAGAAC TTTCGGAAAC 
1100
AGATGATAAA CAGCAAAATG ACAAGTCAGT GATTCCTTCT AAAGATCAGA 
1150
GGTTGTCCGA AAAATCTGAG GTCAGGTCTA TCAGTGTCTC CTCAGGGAAG 
1200
AGAGTTACTG TCACCAGGAT GGTATCCCTT GCTGGATCTG AAATTGAGGT 
1250
TCCTTATGTT TCTCATGTCC GGAGAAGCCG TCCAAGAGAG AACATTATGG 
1300
CTCTTTTGGG ATGTCATTCC AGTTACTTGG AAGATAAAGC TAGTGCAGCA 
1350
GAGAGTAACC TCAATCTGAG TCCATCCCAG TTAAGCAGTG AGGTTGTGAA 
1400
CCGAGATTCG GTGGAAAAGT CTGCTTCTCG ACCGGTCCAA AACGAATTTG 
1450
CTACAAGTGA CGAGAACAAT GTGGAGCATA TTCTCTCTGA GGTTGATCAA 
1500
GAGATGGAGC CAGAGCACAT AGACTCATCT GGAAATAGCT CGGATGAGAA 
1550
TAACATTGGT GTGCCAATCA TGCAAGGTGG TGCGCTTAGA AGGAAGCATC 
1600
ATCGAGCTTG GACTCTGTCT GAGATAGCAA AACTAGTTGA GGGTGTATCA 
1650
AAATATGGAG CCGGGAAGTG GTCTGAAATC AAAAAGCATT TGTTTTCATC 
1700
ACACTCCTAT CGTACCTCTG TAGATCTCAA GGACAAATGG CGAAACCTTT 
1750
TGAAGACAAG CTTTGCTCAG AGTCCCTCAA ACAGCGTGGG AAGTCTCAAG 
1800
AAACATGGGT CGATGCATAT TCCTACGCAG ATTCTGTTAC GGGTAAGGGA 
1850
GCTTGCGGAG AAGCAATCTC AGTAA
1900

>AT1G72650.1 longest ORF length:624
MGTVVGTVED RRDMFEGNAQ TRITPFSSTN QIGNPVAYKL VRVSGDGSLV 
50
PATDEEILEV NDTDMHIPSD TCQTIGYLAT DEENVEVDET DMHIASDACQ 
100
TIGYLPAEGI PSRLSQIESS EAINSGLLHS DNVQPYTDQY NEEMLQKVEQ 
150
EERLENVHGS QMPSTPADAN IQCSNENNFF EEDQVHHEAL LQDECKMNES 
200
DMMERCSNAV ASPKETALSA AAQKPDFSRV RGEICLDNLP IKALQETFRA 
250
TFGRDTTVKD KTWLKRRIAM GLINSCDVPT TNLRVKDNKL IGNQEKSNDV 
300
TNAIRKEMGD DVRATKMKDA PSSTDHVNGH SNGGNHYYAS EDYSSEQRAA 
350
KRVRKPTRRY IEELSETDDK QQNDKSVIPS KDQRLSEKSE VRSISVSSGK 
400
RVTVTRMVSL AGSEIEVPYV SHVRRSRPRE NIMALLGCHS SYLEDKASAA 
450
ESNLNLSPSQ LSSEVVNRDS VEKSASRPVQ NEFATSDENN VEHILSEVDQ 
500
EMEPEHIDSS GNSSDENNIG VPIMQGGALR RKHHRAWTLS EIAKLVEGVS 
550
KYGAGKWSEI KKHLFSSHSY RTSVDLKDKW RNLLKTSFAQ SPSNSVGSLK 
600
KHGSMHIPTQ ILLRVRELAE KQSQ
650