fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G72650 TRFL6 TRF-like 6 (.1.2)

>AT1G72650.2 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, EcoRI, EcoRV, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, SacI, SalI, SmaI, StyI, XhoI
Name Recognition sequence Cut positions
BglII A|GATCT 716, 1740
HindIII A|AGCTT 115, 581, 1776
PstI CTGCA|G 515, 589
PvuII CAG|CTG 317
SpeI A|CTAGT 1650
XbaI T|CTAGA 700


Click here to view TAIR data

>AT1G72650.2 length:1893
ATGGGAACTG TGGTTGGAAC TGTTGAGGAC CGCAGAGATA TGTTTGAGGG 
50
CAATGCTCAG ACAAGGATCA CACCATTTTC TTCAACAAAT CAGATTGGAA 
100
ATCCTGTTGC CTACAAGCTT GTCCGGGTTT CAGGAGATGG GAGTCTAGTG 
150
CCTGCAACCG ATGAAGAAAT TTTGGAAGTC AATGACACCG ATATGCATAT 
200
TCCATCAGAT ACTTGTCAGA CTATAGGCTA CCTTGCAACC GATGAAGAAA 
250
ATGTGGAGGT CGATGAGACG GATATGCATA TTGCATCAGA TGCTTGTCAG 
300
ACTATAGGTT ACCTTCCAGC TGAAGGGATA CCTTCTCGGT TGTCCCAGAT 
350
TGAAAGTTCA GAAGCTATCA ATTCAGGTTT ATTGCATTCT GATAATGTGC 
400
AACCATATAC AGACCAGGTA AAGTCTCGAT CTGAGTATAA CGAGGAGATG 
450
TTGCAAAAGG TTGAACAGGA AGAGAGGCTT GAGAATGTAC ATGGATCTCA 
500
GATGCCTTCC ACTCCTGCAG ATGCCAATAT CCAGTGTTCT AATGAAAACA 
550
ACTTTTTTGA GGAGGATCAA GTCCACCATG AAGCTTTACT GCAGGATGAA 
600
TGCAAGATGA ATGAATCTGA TATGATGGAA CGATGCTCAA ACGCAGTTGC 
650
TAGTCCAAAA GAAACTGCAT TGTCTGCTGC TGCTCAAAAA CCTGATTTTT 
700
CTAGAGTTAG AGGTGAGATC TGCTTGGATA ATTTACCGAT TAAAGCACTG 
750
CAAGAAACAT TCAGGGCAAC TTTTGGCCGT GATACGACTG TTAAGGACAA 
800
GACGTGGCTT AAAAGGAGGA TTGCAATGGG ACTTATTAAT TCTTGTGATG 
850
TACCAACAAC TAACTTGAGG GTGAAAGATA ACAAGTTAAT TGGAAATCAA 
900
GAGAAGTCCA ACGATGTGAC GAATGCCATT AGAAAGGAGA TGGGAGATGA 
950
CGTAAGAGCT ACTAAAATGA AAGATGCTCC ATCGAGTACT GATCATGTGA 
1000
ATGGACATTC AAACGGTGGC AACCACTATT ACGCTAGTGA GGATTATTCC 
1050
AGTGAACAGA GGGCTGCAAA ACGAGTTAGG AAGCCTACAC GAAGATACAT 
1100
TGAAGAACTT TCGGAAACAG ATGATAAACA GCAAAATGAC AAGTCAGTGA 
1150
TTCCTTCTAA AGATCAGAGG TTGTCCGAAA AATCTGAGGT CAGGTCTATC 
1200
AGTGTCTCCT CAGGGAAGAG AGTTACTGTC ACCAGGATGG TATCCCTTGC 
1250
TGGATCTGAA ATTGAGGTTC CTTATGTTTC TCATGTCCGG AGAAGCCGTC 
1300
CAAGAGAGAA CATTATGGCT CTTTTGGGAT GTCATTCCAG TTACTTGGAA 
1350
GATAAAGCTA GTGCAGCAGA GAGTAACCTC AATCTGAGTC CATCCCAGTT 
1400
AAGCAGTGAG GTTGTGAACC GAGATTCGGT GGAAAAGTCT GCTTCTCGAC 
1450
CGGTCCAAAA CGAATTTGCT ACAAGTGACG AGAACAATGT GGAGCATATT 
1500
CTCTCTGAGG TTGATCAAGA GATGGAGCCA GAGCACATAG ACTCATCTGG 
1550
AAATAGCTCG GATGAGAATA ACATTGGTGT GCCAATCATG CAAGGTGGTG 
1600
CGCTTAGAAG GAAGCATCAT CGAGCTTGGA CTCTGTCTGA GATAGCAAAA 
1650
CTAGTTGAGG GTGTATCAAA ATATGGAGCC GGGAAGTGGT CTGAAATCAA 
1700
AAAGCATTTG TTTTCATCAC ACTCCTATCG TACCTCTGTA GATCTCAAGG 
1750
ACAAATGGCG AAACCTTTTG AAGACAAGCT TTGCTCAGAG TCCCTCAAAC 
1800
AGCGTGGGAA GTCTCAAGAA ACATGGGTCG ATGCATATTC CTACGCAGAT 
1850
TCTGTTACGG GTAAGGGAGC TTGCGGAGAA GCAATCTCAG TAA
1900

>AT1G72650.2 longest ORF length:630
MGTVVGTVED RRDMFEGNAQ TRITPFSSTN QIGNPVAYKL VRVSGDGSLV 
50
PATDEEILEV NDTDMHIPSD TCQTIGYLAT DEENVEVDET DMHIASDACQ 
100
TIGYLPAEGI PSRLSQIESS EAINSGLLHS DNVQPYTDQV KSRSEYNEEM 
150
LQKVEQEERL ENVHGSQMPS TPADANIQCS NENNFFEEDQ VHHEALLQDE 
200
CKMNESDMME RCSNAVASPK ETALSAAAQK PDFSRVRGEI CLDNLPIKAL 
250
QETFRATFGR DTTVKDKTWL KRRIAMGLIN SCDVPTTNLR VKDNKLIGNQ 
300
EKSNDVTNAI RKEMGDDVRA TKMKDAPSST DHVNGHSNGG NHYYASEDYS 
350
SEQRAAKRVR KPTRRYIEEL SETDDKQQND KSVIPSKDQR LSEKSEVRSI 
400
SVSSGKRVTV TRMVSLAGSE IEVPYVSHVR RSRPRENIMA LLGCHSSYLE 
450
DKASAAESNL NLSPSQLSSE VVNRDSVEKS ASRPVQNEFA TSDENNVEHI 
500
LSEVDQEMEP EHIDSSGNSS DENNIGVPIM QGGALRRKHH RAWTLSEIAK 
550
LVEGVSKYGA GKWSEIKKHL FSSHSYRTSV DLKDKWRNLL KTSFAQSPSN 
600
SVGSLKKHGS MHIPTQILLR VRELAEKQSQ 
650