fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G73360 ATHDG11, HDG11, EDT1 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1)

>AT1G73360.1 CDS map

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Uncut enzymes: AatII, AccIII(BspMII), AfeI, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, AscI, AseI, AvaI, AvrII, BaeI, BalI, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BglII, BmrI, BpmI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsiWI, BsmAI, BsmBI, BsmFI, BsoBI, BspDI, BspEI, BspMI, BssHII, BstAPI, BstBI, BstXI, BstZ17I, BtgI, BtrI, ClaI, DraI, DraIII, EaeI, EagI, EarI, EciI, EcoNI, FauI, FokI, FseI, FspI, HaeII, HaeIII, HgaI, HhaI, HinP1I, HpaI, HphI, I-CeuI, I-SceI, KasI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MspA1I, NaeI, , NarI, NciI, NcoI, NgoMIV, NotI, NruI, NsiI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PflFI, PleI, PmeI, PmlI, PshAI, PsiI, PspOMI, PvuI, PvuII, RsrII, SacII, SapI, SbfI, ScaI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SspI, StuI, SwaI, TliI, Tth111I, XbaI, XcmI, XhoI, XmaI
Name Recognition sequence Cut positions
Acc65I G|GTACC 1012, 1386
AccI GT|[AC][TG]AC 465, 916, 1846
AccII(FnuDII) CG|CG 1079
AciI C|CGC 117, 2130
AclI AA|CGTT 101
AflII C|TTAAG 259
AflIII A|CPuPyGT 920
AluI AG|CT 189, 255, 343, 417, 450, 806, 970, 1092, 1124, 1287, 1814, 1985, 2002, 2149, 2161
ApaLI G|TGCAC 290
ApoI Pu|AATTPy 314, 1084
AvaII G|G[AT]CC 378, 573, 588, 636, 2142
BamHI G|GATCC 1771
BanI G|GPyPuCC 1012, 1386
BanII GPuGCPy|C 1572, 1986
BclI T|GATCA 1472
BfaI C|TAG 555, 2004
BlpI GC|TNAGC 193
BsaAI PyAC|GTPu 1766
BsaBI GATNN|NNATC 605, 1194
BsaHI GPu|CGPyC 16
BsaJI C|CNNGG 840, 1235
BsaWI [AT]|CCGG[AT] 1431
BsiHKAI G[AT]GC[AT]|C 290, 1986
BslI CCNNNNN|NNGG 372, 1615
BsmI GAATGCN| 901
Bsp1286I G[GAT]GC[CAT]|C 290, 1572, 1986
BspHI T|CATGA 896, 1284
BspT107I(HgiCI) G|G[TC][AG]CC 1012, 1386
BsrBI GAG|CGG 1887, 2139
BsrDI GCAATGNN| 723, 1884
BsrFI Pu|CCGGPy 703
BsrGI T|GTACA 2115
BsrI ACTGGN| 565, 1278
BssKI |CCNGG 615, 1743
BssSI C|TCGTG 1403
BstEII G|GTNACC 1342
BstF5I GGATGNN| 1202, 1470, 1684
BstNI CC|[AT]GG 615, 1743
BstUI CG|CG 1079
BstYI Pu|GATCPy 396, 1501, 1771, 1896
Bsu36I CC|TNAGG 1923
BtsI GCAGTGNN| 990, 1707
Cac8I GCN|NGC 354, 1091, 2005
Cfr10I [AG]|CCGG[TC] 703
DdeI C|TNAG 192, 253, 441, 658, 735, 1159, 1177, 1462, 1675, 1922, 1988
DpnI GA-CH3|TC 395, 605, 828, 1151, 1331, 1406, 1471, 1500, 1734, 1770, 1895
DpnII |GATC 395, 605, 828, 1151, 1331, 1406, 1471, 1500, 1734, 1770, 1895
DrdI GACNNNN|NNGTC 581
EcoO109I PuG|GNCCPy 379
EcoRI G|AATTC 1084
EcoRV GAT|ATC 498
Fnu4HI GC|NGC 40, 781, 969, 1602, 1866
HincII GTPy|PuAC 916, 1106
HindIII A|AGCTT 418
HinfI G|ANTC 128, 141, 862, 1208, 1421, 1549, 1824, 2076
HpaII C|CGG 702, 1430
Hpy188I TCN|GA 78, 239, 422, 678, 746, 1463, 1530, 1962, 2033
Hpy99I CG[AT]CG| 8, 17, 71, 1981, 2056
HpyCH4III ACN|GT 49, 370, 536, 1483, 1521, 1590, 1849, 2022, 2088, 2112
HpyCH4IV A|CGT 100, 1140, 1765
HpyCH4V TG|CA 289, 433, 472, 525, 651, 718, 782, 967, 985, 1024, 1029, 1561, 1600, 1707, 1751, 1777, 1806
KpnI GGTAC|C 1012, 1386
MboI |GATC 395, 605, 828, 1151, 1331, 1406, 1471, 1500, 1734, 1770, 1895
MseI T|TAA 258, 560, 1487, 2091, 2124
MslI CAPyNN|NNPuTG 170, 925, 1022, 1200, 1882
MspI C|CGG 702, 1430
MwoI GCNNNNN|NNGC 297, 659, 717, 1087, 1326, 1805
N.BstNBI GAGTCNNNN|N 867, 2081
NdeI CA|TATG 1148
NheI G|CTAGC 2005
NlaIII CATG| 269, 353, 484, 584, 682, 895, 919, 925, 1016, 1283, 1447, 1795
NlaIV GGN|NCC 185, 213, 1012, 1386, 1771, 1975
NspI PuCATG|Py 354, 920, 1796
PciI A|CATGT 920
PflMI CCANNNN|NTGG 1615
PpuMI PuG|G[AT]CCPy 379
PspGI |CC[AT]GG 615, 1743
PstI CTGCA|G 783
RsaI GT|AC 481, 1011, 1385, 2114
SacI GAGCT|C 1986
SalI G|TCGAC 916
Sau3AI |GATC 395, 605, 828, 1151, 1331, 1406, 1471, 1500, 1734, 1770, 1895
Sau96I G|GNCC 378, 573, 588, 636, 2142
ScrFI CC|NGG 615, 1743
SfcI C|TPuPyAG 783, 1185, 1848, 2147, 2159
SmlI C|TPyPuAG 259, 349, 2136
SpeI A|CTAGT 556
SphI GCATG|C 354
StyI C|C[AT][AT]GG 1235
Taqƒ¿I T|CGA 143, 597, 859, 864, 915, 1979
TfiI G|A[AT]TC 128, 141, 1208, 1421, 1549
TseI G|C[AT]GC 781, 969, 1602, 1866
Tsp45I |GT[CG]AC 112, 1557
Tsp509I |AATT 201, 313, 729, 1083, 1625, 1646, 2048, 2122
TspRI NNCA[CG]TGNN| 990, 1679, 1707, 1857
XmnI GAANN|NNTTC 820, 953, 1280


Click here to view TAIR data

>AT1G73360.1 length:2169
ATGAGTTTCG TCGTCGGCGT CGGCGGAAGT GGTAGTGGAA GCGGCGGAGA 
50
CGGTGGTGGT AGTCATCATC ACGACGGCTC TGAAACTGAT AGGAAGAAGA 
100
AACGTTACCA TCGTCACACC GCTCAACAGA TTCAACGCCT TGAATCGAGT 
150
TTCAAGGAGT GTCCTCATCC AGATGAGAAA CAGAGGAACC AGCTTAGCAG 
200
AGAATTGGGT TTGGCTCCAA GACAAATCAA GTTCTGGTTT CAGAACAGAA 
250
GAACTCAGCT TAAGGCTCAA CATGAGAGAG CAGATAATAG TGCACTAAAG 
300
GCAGAGAATG ATAAAATTCG TTGCGAAAAC ATTGCTATTA GAGAAGCTCT 
350
CAAGCATGCT ATATGTCCTA ACTGTGGAGG TCCTCCTGTT AGTGAAGATC 
400
CTTACTTTGA TGAACAAAAG CTTCGGATTG AAAATGCACA CCTTAGAGAA 
450
GAGCTTGAAA GAATGTCTAC CATTGCATCA AAGTACATGG GAAGACCGAT 
500
ATCGCAACTC TCTACGCTAC ATCCAATGCA CATCTCACCG TTGGATTTGT 
550
CAATGACTAG TTTAACTGGT TGTGGACCTT TTGGTCATGG TCCTTCACTC 
600
GATTTTGATC TTCTTCCAGG AAGTTCTATG GCTGTTGGTC CTAATAATAA 
650
TCTGCAATCT CAGCCTAACT TGGCTATATC AGACATGGAT AAGCCTATTA 
700
TGACCGGCAT TGCTTTGACT GCAATGGAAG AATTGCTCAG GCTTCTTCAG 
750
ACAAATGAAC CTCTATGGAC AAGAACAGAT GGCTGCAGAG ACATTCTCAA 
800
TCTTGGTAGC TATGAGAATG TTTTCCCAAG ATCAAGTAAC CGAGGGAAGA 
850
ACCAGAACTT TCGAGTCGAA GCATCAAGGT CTTCTGGTAT TGTCTTCATG 
900
AATGCTATGG CACTTGTCGA CATGTTCATG GATTGTGTCA AGTGGACAGA 
950
ACTCTTTCCC TCTATCATTG CAGCTTCTAA AACACTTGCA GTGATTTCTT 
1000
CAGGAATGGG AGGTACCCAT GAGGGTGCAT TGCATTTGTT GTATGAAGAA 
1050
ATGGAAGTGC TTTCGCCTTT AGTAGCAACA CGCGAATTCT GCGAGCTACG 
1100
CTATTGTCAA CAGACTGAAC AAGGAAGCTG GATAGTTGTA AACGTCTCAT 
1150
ATGATCTTCC TCAGTTTGTT TCTCACTCTC AGTCCTATAG ATTTCCATCT 
1200
GGATGCTTGA TTCAGGATAT GCCCAATGGA TATTCCAAGG TTACTTGGGT 
1250
TGAACATATT GAAACTGAAG AAAAAGAACT GGTTCATGAG CTATACAGAG 
1300
AGATTATTCA CAGAGGGATT GCTTTTGGGG CTGATCGTTG GGTTACCACT 
1350
CTCCAGAGAA TGTGTGAAAG ATTTGCTTCT CTATCGGTAC CAGCGTCTTC 
1400
ATCTCGTGAT CTCGGTGGAG TGATTCTATC ACCGGAAGGG AAGAGAAGCA 
1450
TGATGAGACT TGCTCAGAGG ATGATCAGCA ACTACTGTTT AAGTGTCAGC 
1500
AGATCCAACA ACACACGCTC AACCGTTGTT TCGGAACTGA ACGAAGTTGG 
1550
AATCCGTGTG ACTGCACATA AGAGCCCTGA ACCAAACGGC ACAGTCCTAT 
1600
GTGCAGCCAC CACTTTCTGG CTTCCCAATT CTCCTCAAAA TGTCTTCAAT 
1650
TTCCTCAAAG ACGAAAGAAC CCGTCCTCAG TGGGATGTTC TTTCAAACGG 
1700
AAACGCAGTG CAAGAAGTTG CTCACATCTC AAACGGATCA CATCCTGGAA 
1750
ACTGCATATC GGTTCTACGT GGATCCAATG CAACACATAG CAACAACATG 
1800
CTTATTCTGC AAGAAAGCTC AACAGACTCA TCAGGAGCAT TTGTGGTCTA 
1850
CAGTCCAGTG GATTTAGCAG CATTGAACAT CGCAATGAGC GGTGAAGATC 
1900
CTTCTTATAT TCCTCTCTTG TCCTCAGGTT TCACAATCTC ACCAGATGGA 
1950
AATGGCTCAA ACTCTGAACA AGGAGGAGCC TCGACGAGCT CAGGACGGGC 
2000
ATCAGCTAGC GGTTCGTTGA TAACGGTTGG GTTTCAGATA ATGGTAAGCA 
2050
ATTTACCGAC GGCAAAACTG AATATGGAGT CGGTGGAAAC GGTTAATAAC 
2100
CTGATAGGAA CAACTGTACA TCAAATTAAA ACCGCCTTGA GCGGTCCTAC 
2150
AGCTTCAACT ACAGCTTGA
2200

>AT1G73360.1 longest ORF length:722
MSFVVGVGGS GSGSGGDGGG SHHHDGSETD RKKKRYHRHT AQQIQRLESS 
50
FKECPHPDEK QRNQLSRELG LAPRQIKFWF QNRRTQLKAQ HERADNSALK 
100
AENDKIRCEN IAIREALKHA ICPNCGGPPV SEDPYFDEQK LRIENAHLRE 
150
ELERMSTIAS KYMGRPISQL STLHPMHISP LDLSMTSLTG CGPFGHGPSL 
200
DFDLLPGSSM AVGPNNNLQS QPNLAISDMD KPIMTGIALT AMEELLRLLQ 
250
TNEPLWTRTD GCRDILNLGS YENVFPRSSN RGKNQNFRVE ASRSSGIVFM 
300
NAMALVDMFM DCVKWTELFP SIIAASKTLA VISSGMGGTH EGALHLLYEE 
350
MEVLSPLVAT REFCELRYCQ QTEQGSWIVV NVSYDLPQFV SHSQSYRFPS 
400
GCLIQDMPNG YSKVTWVEHI ETEEKELVHE LYREIIHRGI AFGADRWVTT 
450
LQRMCERFAS LSVPASSSRD LGGVILSPEG KRSMMRLAQR MISNYCLSVS 
500
RSNNTRSTVV SELNEVGIRV TAHKSPEPNG TVLCAATTFW LPNSPQNVFN 
550
FLKDERTRPQ WDVLSNGNAV QEVAHISNGS HPGNCISVLR GSNATHSNNM 
600
LILQESSTDS SGAFVVYSPV DLAALNIAMS GEDPSYIPLL SSGFTISPDG 
650
NGSNSEQGGA STSSGRASAS GSLITVGFQI MVSNLPTAKL NMESVETVNN 
700
LIGTTVHQIK TALSGPTAST TA
750