fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G75250 RSM3, ATRL6 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2)

>AT1G75250.2 CDS map

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Uncut enzymes: AatII, Acc65I, AccI, AccII(FnuDII), AccIII(BspMII), AciI, AclI, AfeI, AflII, AflIII, AgeI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvaI, AvaII, AvrII, BaeI, BalI, BamHI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BfaI, BglI, BlpI, BmrI, BpmI, BsaAI, BsaBI, BsaI, BsaWI, BsaXI, BseRI, BsgI, BsiHKAI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, Bsp1286I, BspDI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrFI, BsrGI, BssHII, BssKI, BssSI, BstAPI, BstEII, BstF5I, BstNI, BstUI, BstXI, BstZ17I, Bsu36I, BtrI, BtsI, Cac8I, Cfr10I, ClaI, DdeI, DraI, EaeI, EagI, EarI, EciI, EcoNI, EcoRI, EcoRV, FauI, Fnu4HI, FokI, FseI, FspI, HgaI, HincII, HindIII, HpaI, HpaII, HphI, HpyCH4V, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MseI, MslI, MspA1I, MspI, MwoI, N.BstNBI, NaeI, , NarI, NciI, NdeI, NgoMIV, NheI, NlaIV, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspGI, PspOMI, PstI, PvuI, PvuII, RsaI, RsrII, SacI, SacII, SalI, SapI, SbfI, ScaI, ScrFI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, StuI, SwaI, TliI, TseI, Tsp45I, TspRI, Tth111I, XbaI, XcmI, XhoI, XmaI, XmnI
Name Recognition sequence Cut positions
AhdI GACNNN|NNGTC 41
AluI AG|CT 118
ApoI Pu|AATTPy 279
BglII A|GATCT 287
BsaHI GPu|CGPyC 3
BsaJI C|CNNGG 31, 68
BsiEI CGPuPy|CG 96
BslI CCNNNNN|NNGG 100
BsrI ACTGGN| 196
BstBI TT|CGAA 229
BstYI Pu|GATCPy 177, 287
BtgI C|CPuPyGG 31
DpnI GA-CH3|TC 176, 286
DpnII |GATC 176, 286
DraIII CACNNN|GTG 109
DrdI GACNNNN|NNGTC 169
EcoO109I PuG|GNCCPy 65
HaeII PuGCGC|Py 152
HaeIII GG|CC 64
HhaI GCG|C 151
HinP1I G|CGC 151
HinfI G|ANTC 231
Hpy188I TCN|GA 124
Hpy99I CG[AT]CG| 170
HpyCH4III ACN|GT 135
HpyCH4IV A|CGT 35
MboI |GATC 176, 286
NcoI C|CATGG 31
NlaIII CATG| 30
Sau3AI |GATC 176, 286
Sau96I G|GNCC 64
SfcI C|TPuPyAG 137
SmlI C|TPyPuAG 12, 240
StyI C|C[AT][AT]GG 31, 68
Taqƒ¿I T|CGA 57, 171, 189, 228
TfiI G|A[AT]TC 231
Tsp509I |AATT 215, 278


Click here to view TAIR data

>AT1G75250.2 length:294
ATGGCGTCAA ACTCAAGAAG TTCAATCTCA CCATGGACGT TTAGTCAAAA 
50
CAAGATGTTC GAGAGGGCCT TGGCAGTTTA CGACAAGGAC ACACCCGACC 
100
GATGGCACAA TGTGGCAAAA GCTGTCGGAG GGAAAACTGT AGAAGAAGTG 
150
AAGCGCCACT ATGACATTCT CGTCGAGGAT CTCATCAACA TCGAGACTGG 
200
TCGTGTCCCT TTGCCCAATT ACAAGACCTT CGAATCTAAC TCAAGAAGCA 
250
TCAATGACTT TGACACAAGG AAAATGAAGA ATTTGAAGAT CTAA
300

>AT1G75250.2 longest ORF length:97
MASNSRSSIS PWTFSQNKMF ERALAVYDKD TPDRWHNVAK AVGGKTVEEV 
50
KRHYDILVED LINIETGRVP LPNYKTFESN SRSINDFDTR KMKNLKI
100