fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G75410 BLH3 BEL1-like homeodomain 3 (.1.2)

>AT1G75410.2 CDS map

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Uncut enzymes: AatII, Acc65I, AccI, AccIII(BspMII), AclI, AfeI, AflII, AflIII, AgeI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvaI, AvaII, AvrII, BaeI, BalI, BamHI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BmrI, BpmI, BsaAI, BsaHI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsiHKAI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, Bsp1286I, BspDI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrFI, BsrGI, BssHII, BssSI, BstAPI, BstEII, BstZ17I, Bsu36I, BtgI, BtrI, BtsI, Cfr10I, ClaI, DraI, DraIII, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HhaI, HinP1I, HpaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MluI, MlyI, MnlI, MscI, MslI, N.BstNBI, NaeI, , NarI, NciI, NcoI, NdeI, NgoMIV, NheI, NlaIV, NotI, NruI, NsiI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspOMI, PstI, PvuI, RsrII, SacI, SacII, SalI, SapI, Sau96I, SbfI, ScaI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SspI, StuI, SwaI, TliI, Tsp45I, TspRI, Tth111I, XbaI, XcmI, XhoI, XmaI
Name Recognition sequence Cut positions
AccII(FnuDII) CG|CG 875, 880, 960, 1195
AciI C|CGC 865, 959
AhdI GACNNN|NNGTC 1335
AluI AG|CT 88, 221, 271, 374, 693, 714, 775, 817, 838, 915, 1000, 1033, 1084, 1314, 1457
ApoI Pu|AATTPy 407
BclI T|GATCA 402, 905
BfaI C|TAG 627, 1406
BglII A|GATCT 508
BlpI GC|TNAGC 821
BsaBI GATNN|NNATC 1496
BsaJI C|CNNGG 1512
BsaWI [AT]|CCGG[AT] 130
BslI CCNNNNN|NNGG 1050
BsrI ACTGGN| 1444
BssKI |CCNGG 1172
BstBI TT|CGAA 140, 315
BstF5I GGATGNN| 733
BstNI CC|[AT]GG 1172
BstUI CG|CG 875, 880, 960, 1195
BstXI CCANNNNN|NTGG 1527
BstYI Pu|GATCPy 263, 508, 1419
Cac8I GCN|NGC 29, 713
DdeI C|TNAG 219, 504, 820, 966, 974, 1312
DpnI GA-CH3|TC 215, 262, 401, 507, 904, 977, 1418
DpnII |GATC 215, 262, 401, 507, 904, 977, 1418
DrdI GACNNNN|NNGTC 184, 1567
Fnu4HI GC|NGC 105, 816
HaeIII GG|CC 1508
HincII GTPy|PuAC 187
HindIII A|AGCTT 89, 222, 715, 776, 916
HinfI G|ANTC 48, 308, 454, 850, 896, 1125, 1254, 1329, 1352
HpaII C|CGG 129
Hpy188I TCN|GA 117, 260, 357, 399, 681, 842, 907, 936, 1128, 1389
Hpy99I CG[AT]CG| 176, 878
HpyCH4III ACN|GT 201, 229, 469, 983, 1432
HpyCH4IV A|CGT 177, 195, 685, 1503
HpyCH4V TG|CA 30, 106, 1005, 1177, 1299, 1393, 1414
MboI |GATC 215, 262, 401, 507, 904, 977, 1418
MfeI C|AATTG 322, 535
MseI T|TAA 245, 339, 519, 719, 1191
MspA1I C[AC]G|C[GT]G 272, 867
MspI C|CGG 129
MwoI GCNNNNN|NNGC 709, 865, 1097, 1148
NlaIII CATG| 28, 1138, 1472
NspI PuCATG|Py 29
PspGI |CC[AT]GG 1172
PvuII CAG|CTG 272
RsaI GT|AC 500, 970
Sau3AI |GATC 215, 262, 401, 507, 904, 977, 1418
ScrFI CC|NGG 1172
SexAI A|CC[AT]GGT 1173
SfcI C|TPuPyAG 697
SmlI C|TPyPuAG 378
SphI GCATG|C 29
StyI C|C[AT][AT]GG 1512
Taqƒ¿I T|CGA 139, 314, 792, 1081, 1163, 1204
TfiI G|A[AT]TC 48, 308, 454, 850, 896, 1125, 1254, 1352
TseI G|C[AT]GC 105, 816
Tsp509I |AATT 321, 406, 464, 534, 573, 1181, 1551
XmnI GAANN|NNTTC 896


Click here to view TAIR data

>AT1G75410.2 length:1575
ATGGCTGTGT ATTACCCTAA TAGTGTCGGC ATGCAATCTC TTTACCAAGA 
50
ATCCATTTAC CTCAACGAAC AACAACAACA ACAACAACAA GCTTCTTCTT 
100
CCTCTGCTGC ATCTTTCTCC GAGATTGTTT CCGGTGATGT TCGAAACAAC 
150
GAGATGGTAT TTATCCCACC AACAAGCGAC GTAGCCGTCA ACGGAAACGT 
200
AACGGTGTCA AGTAACGATC TAAGCTTTCA CGGTGGAGGA CTTTCTTTAA 
250
GTCTTGGTAA TCAGATCCAG TCAGCTGTCT CTGTTTCTCC GTTTCAGTAT 
300
CATTACCAGA ATCTTTCGAA CCAATTGAGT TACAATAATC TTAATCCTTC 
350
TACTATGTCT GATGAGAATG GGAAGAGCTT GAGTGTTCAT CAGCATCACT 
400
CTGATCAAAT TTTACCTTCC TCTGTTTACA ACAACAATGG TAATAATGGT 
450
GTTGGATTCT ACAACAATTA CCGTTACGAG ACATCAGGGT TTGTGAGTAG 
500
TGTACTGAGA TCTCGTTACC TTAAACCAAC ACAACAATTG CTTGATGAAG 
550
TTGTTAGTGT AAGGAAAGAT TTGAAATTGG GGAATAAGAA GATGAAGAAT 
600
GATAAAGGTC AAGACTTTCA CAATGGGTCT AGTGATAACA TTACAGAAGA 
650
TGATAAATCT CAATCGCAGG AGTTGTCTCC TTCAGAACGT CAGGAGCTAC 
700
AGAGCAAGAA GAGCAAGCTT TTAACAATGG TGGATGAGGT AGATAAAAGG 
750
TATAACCAAT ACCATCATCA AATGGAAGCT TTAGCATCGT CTTTCGAGAT 
800
GGTAACAGGT CTTGGAGCAG CTAAGCCTTA CACATCCGTA GCTCTGAATA 
850
GAATCTCTCG CCATTTCCGC TGTTTACGCG ACGCGATAAA AGAACAGATT 
900
CAGGTGATCA GAGGGAAGCT TGGGGAGAGA GAGACTTCTG ATGAACAAGG 
950
AGAGAGGATA CCGCGTCTTA GGTACTTAGA TCAACGGTTG AGACAACAGA 
1000
GAGCTTTGCA TCAACAACTT GGAATGGTTA GACCAGCTTG GAGACCACAA 
1050
AGAGGCTTAC CTGAAAACTC TGTCTCTATA CTTCGAGCTT GGCTCTTTGA 
1100
GCATTTCCTT CATCCATATC CTAAAGAATC AGAGAAAATC ATGCTTTCAA 
1150
AGCAGACAGG ACTATCGAAA AACCAGGTTG CAAATTGGTT TATTAACGCG 
1200
AGAGTTCGAC TATGGAAACC AATGATTGAA GAGATGTATA AAGAAGAGTT 
1250
TGGAGAATCA GCAGAGTTAC TCTCTAACTC TAATCAAGAC ACCAAAAAAA 
1300
TGCAGGAAAC ATCTCAGCTC AAACACGAAG ACTCTTCGTC TTCGCAACAA 
1350
CAGAATCAGG GAAACAACAA CAACAACATC CCATATACAT CTGATGCAGA 
1400
ACAAAACCTA GTCTTTGCAG ATCCTAAACC AGACCGTGCT ACTACTGGAG 
1450
ATTACGACAG CTTGATGAAC TATCATGGGT TTGGTATTGA TGATTACAAT 
1500
CGTTACGTTG GCCTTGGAAA CCAACAAGAT GGCAGATATT CTAATCCCCA 
1550
TCAATTACAC GACTTTGTTG TCTAA
1600

>AT1G75410.2 longest ORF length:524
MAVYYPNSVG MQSLYQESIY LNEQQQQQQQ ASSSSAASFS EIVSGDVRNN 
50
EMVFIPPTSD VAVNGNVTVS SNDLSFHGGG LSLSLGNQIQ SAVSVSPFQY 
100
HYQNLSNQLS YNNLNPSTMS DENGKSLSVH QHHSDQILPS SVYNNNGNNG 
150
VGFYNNYRYE TSGFVSSVLR SRYLKPTQQL LDEVVSVRKD LKLGNKKMKN 
200
DKGQDFHNGS SDNITEDDKS QSQELSPSER QELQSKKSKL LTMVDEVDKR 
250
YNQYHHQMEA LASSFEMVTG LGAAKPYTSV ALNRISRHFR CLRDAIKEQI 
300
QVIRGKLGER ETSDEQGERI PRLRYLDQRL RQQRALHQQL GMVRPAWRPQ 
350
RGLPENSVSI LRAWLFEHFL HPYPKESEKI MLSKQTGLSK NQVANWFINA 
400
RVRLWKPMIE EMYKEEFGES AELLSNSNQD TKKMQETSQL KHEDSSSSQQ 
450
QNQGNNNNNI PYTSDAEQNL VFADPKPDRA TTGDYDSLMN YHGFGIDDYN 
500
RYVGLGNQQD GRYSNPHQLH DFVV
550