fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G75540 LHUS, AtBBX21, STH2 long hypocotyl under shade, B-box domain protein 21, B BOX 21, salt tolerance homolog2 (.1)

>AT1G75540.1 CDS map

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Uncut enzymes: ApaI, AscI, EcoRI, EcoRV, HindIII, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, StyI, XbaI, XhoI
Name Recognition sequence Cut positions
BamHI G|GATCC 517
BglII A|GATCT 982


Click here to view TAIR data

>AT1G75540.1 length:996
ATGAAGATCA GGTGCGACGT CTGCGATAAA GAAGAAGCGT CGGTGTTTTG 
50
CACGGCCGAC GAAGCATCTC TCTGCGGCGG CTGCGACCAC CAAGTCCACC 
100
ACGCTAACAA ACTCGCCTCT AAACATCTCC GTTTCTCTCT CCTTTATCCT 
150
TCTTCTTCCA ACACCTCCTC TCCTCTCTGC GACATCTGTC AGGATAAAAA 
200
AGCTCTGTTG TTCTGTCAAC AAGATAGAGC TATTTTATGC AAAGATTGCG 
250
ATTCATCGAT CCACGCTGCG AACGAACACA CAAAGAAACA CGATAGGTTT 
300
CTTCTTACAG GGGTTAAGCT CTCTGCAACA TCGTCTGTTT ACAAACCTAC 
350
TTCGAAATCT TCTTCTTCTT CTTCAAGCAA CCAAGATTTC TCTGTCCCTG 
400
GATCATCAAT CTCTAATCCT CCTCCTCTCA AGAAACCTCT CTCAGCTCCT 
450
CCTCAGAGCA ACAAGATCCA ACCCTTTTCG AAGATCAACG GCGGTGATGC 
500
GTCGGTGAAT CAGTGGGGAT CCACAAGCAC GATTTCTGAG TATTTGATGG 
550
ATACGTTACC TGGTTGGCAC GTTGAGGATT TCCTCGATTC CTCTCTTCCT 
600
ACTTATGGTT TCTCTAAGAG TGGTGATGAT GATGGAGTGT TACCATATAT 
650
GGAACCAGAA GATGACAACA ACACTAAGAG AAACAACAAC AACAACAACA 
700
ACAACAACAA CAATACAGTG TCACTTCCAT CTAAGAATTT AGGGATTTGG 
750
GTCCCTCAGA TTCCACAAAC TCTTCCTTCT TCATACCCAA ATCAATACTT 
800
TTCTCAAGAC AACAACATAC AGTTTGGGAT GTACAACAAA GAAACATCAC 
850
CAGAAGTAGT GTCTTTTGCT CCAATACAAA ACATGAAACA ACAAGGACAG 
900
AACAACAAGA GATGGTATGA TGATGGTGGC TTCACTGTCC CACAGATCAC 
950
TCCTCCTCCT CTTTCTTCTA ATAAAAAGTT TAGATCTTTC TGGTAA
1000

>AT1G75540.1 longest ORF length:331
MKIRCDVCDK EEASVFCTAD EASLCGGCDH QVHHANKLAS KHLRFSLLYP 
50
SSSNTSSPLC DICQDKKALL FCQQDRAILC KDCDSSIHAA NEHTKKHDRF 
100
LLTGVKLSAT SSVYKPTSKS SSSSSSNQDF SVPGSSISNP PPLKKPLSAP 
150
PQSNKIQPFS KINGGDASVN QWGSTSTISE YLMDTLPGWH VEDFLDSSLP 
200
TYGFSKSGDD DGVLPYMEPE DDNNTKRNNN NNNNNNNNTV SLPSKNLGIW 
250
VPQIPQTLPS SYPNQYFSQD NNIQFGMYNK ETSPEVVSFA PIQNMKQQGQ 
300
NNKRWYDDGG FTVPQITPPP LSSNKKFRSF W
350