fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G77200 Integrase-type DNA-binding superfamily protein (.1)

>AT1G77200.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, EcoRV, HindIII, HpaI, KpnI, NdeI, NheI, PacI, PstI, SpeI
Name Recognition sequence Cut positions
NcoI C|CATGG 374
NotI GC|GGCCGC 369
PvuII CAG|CTG 251, 437
SacI GAGCT|C 298
SalI G|TCGAC 516
SmaI CCC|GGG 120
StyI C|C[AT][AT]GG 374, 628
XbaI T|CTAGA 558
XhoI C|TCGAG 459


Click here to view TAIR data

>AT1G77200.1 length:735
ATGACCGAGT CATCCATTAT CTCCGTCAAA CAATCGTCTC CGGTGCCGGA 
50
GGAGGAGGAT CATCATCATC ACCAACAAGA CTCCCACCGA ACCAACACCA 
100
AGAAACGTGT AAGATCCGAC CCGGGTTACC GAGGCGTCCG GATGCGAACG 
150
TGGGGCAAAT GGGTCTCCGA GATCCGAGAG CCTCGCAAGA AGAGCCGAAT 
200
CTGGCTAGGC ACTTTCTCCA CACCGGAAAT GGCGGCGCGT GCACATGACG 
250
CAGCTGCTCT CACCATTAAA GGAACTTCCG CCGTCCTCAA CTTCCCGGAG 
300
CTCGCCACTT ACCTTCCCCG TCCAGCTTCC TCCTCTCCAC GCGACGTTCA 
350
AGCCGCAGCC GCCGTAGCGG CCGCCATGGA CTTCTCCCCC TCCTCCTCCT 
400
CTCTCGTAGT CTCCGATCCA ACCACCGTCA TCGCCCCAGC TGAGACGCAG 
450
TTGTCTTCCT CGAGCTATTC AACGTGTACG TCATCGTCGT TGTCACCGTC 
500
AAGCGAAGAA GCTGCGTCGA CGGCGGAAGA ACTAAGCGAG ATAGTGGAGT 
550
TACCGAGTCT AGAGACGAGT TACGATGAGT CATTGAGCGA GTTTGTGTAC 
600
GTTGACTCGG CGTATCCACC TAGTTCGCCT TGGTATATTA ATAATTGTTA 
650
TAGCTTTTAT TACCACAGCG ACGAAAATGG CATTTCGATG GCTGAACCTT 
700
TCGACTCTTC CAATTTTGGC CCCCTTTTTC CTTAG
750

>AT1G77200.1 longest ORF length:244
MTESSIISVK QSSPVPEEED HHHHQQDSHR TNTKKRVRSD PGYRGVRMRT 
50
WGKWVSEIRE PRKKSRIWLG TFSTPEMAAR AHDAAALTIK GTSAVLNFPE 
100
LATYLPRPAS SSPRDVQAAA AVAAAMDFSP SSSSLVVSDP TTVIAPAETQ 
150
LSSSSYSTCT SSSLSPSSEE AASTAEELSE IVELPSLETS YDESLSEFVY 
200
VDSAYPPSSP WYINNCYSFY YHSDENGISM AEPFDSSNFG PLFP
250