fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G77640 Integrase-type DNA-binding superfamily protein (.1)

>AT1G77640.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, EcoRI, EcoRV, HindIII, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, SacI, SalI, SmaI, SpeI, StyI, XbaI, XhoI
Name Recognition sequence Cut positions
BamHI G|GATCC 588
BglII A|GATCT 620
PvuII CAG|CTG 230, 482


Click here to view TAIR data

>AT1G77640.1 length:735
ATGGTGAAAC AAGAACTCAA GATCCAAGTT ACTACTTCCT CATCATCACT 
50
CTCTCATTCT TCATCTTCTT CTTCTTCTTC AACGTCGGCA CTACGTCATC 
100
AATCTTGTAA GAACAAGATA AAGAAGTATA AAGGTGTGAG GATGCGAAGT 
150
TGGGGATCAT GGGTTACTGA AATTAGGGCA CCAAATCAAA AGACAAGAAT 
200
CTGGTTAGGT TCTTACTCCA CCGCAGAAGC AGCTGCTAGG GCTTACGACG 
250
CTGCTCTCTT GTGTCTTAAG GGACCTAAAG CTAATCTCAA CTTCCCTAAC 
300
ATCACCACTA CTTCTCCTTT TCTTATGAAC ATCGACGAAA AGACCCTTTT 
350
GTCCCCAAAA TCAATCCAAA AGGTCGCCGC TCAAGCCGCT AACTCCTCTT 
400
CTGACCATTT TACCCCTCCG TCCGATGAAA ATGATCATGA TCATGATGAC 
450
GGACTCGATC ACCATCCATC TGCTTCTTCT TCAGCTGCAT CTTCACCACC 
500
AGATGATGAT CATCATAATG ATGACGATGG TGATTTGGTA TCGTTGATGG 
550
AATCTTTCGT GGATTACAAC GAACACGTGT CTCTGATGGA TCCATCGCTG 
600
TATGAATTTG GACATAATGA GATCTTCTTC ACCAACGGAG ATCCGTTTGA 
650
TTATTCTCCA CAGTTACATA GCTCAGAGGC AACGATGGAT GACTTCTACG 
700
ACGATGTTGA TATTCCGCTA TGGAGTTTCA GTTAA
750

>AT1G77640.1 longest ORF length:244
MVKQELKIQV TTSSSSLSHS SSSSSSSTSA LRHQSCKNKI KKYKGVRMRS 
50
WGSWVTEIRA PNQKTRIWLG SYSTAEAAAR AYDAALLCLK GPKANLNFPN 
100
ITTTSPFLMN IDEKTLLSPK SIQKVAAQAA NSSSDHFTPP SDENDHDHDD 
150
GLDHHPSASS SAASSPPDDD HHNDDDGDLV SLMESFVDYN EHVSLMDPSL 
200
YEFGHNEIFF TNGDPFDYSP QLHSSEATMD DFYDDVDIPL WSFS
250