fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G77850 ARF17 auxin response factor 17 (.1)

>AT1G77850.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, EcoRI, HindIII, KpnI, NdeI, NheI, NotI, PacI, PvuII, SacI, SmaI, SpeI, XbaI
Name Recognition sequence Cut positions
BglII A|GATCT 778
EcoRV GAT|ATC 487
HpaI GTT|AAC 1561
NcoI C|CATGG 492, 1036, 1051, 1117
PstI CTGCA|G 626, 1622
SalI G|TCGAC 1440
StyI C|C[AT][AT]GG 492, 740, 1036, 1051, 1117, 1749
XhoI C|TCGAG 947


Click here to view TAIR data

>AT1G77850.1 length:1758
ATGTCACCGC CGTCGGCAAC CGCCGGTGAC ATCAACCACC GTGAAGTAGA 
50
CCCGACGATC TGGCGCGCTT GTGCTGGAGC CTCCGTCCAG ATCCCTGTCC 
100
TTCACTCTAG GGTTTACTAC TTTCCACAAG GTCACGTTGA GCACTGTTGC 
150
CCTCTCCTCT CTACTCTTCC TTCCTCCACC TCGCCGGTTC CATGTATCAT 
200
CACTTCAATT CAGTTGCTCG CCGATCCGGT CACCGACGAG GTCTTTGCTC 
250
ACCTTATTCT TCAACCGATG ACGCAGCAGC AGTTTACTCC GACTAATTAT 
300
TCACGATTCG GCAGATTCGA TGGCGATGTT GATGATAACA ACAAGGTGAC 
350
TACCTTCGCC AAAATTCTCA CGCCTTCTGA TGCTAACAAT GGAGGTGGCT 
400
TCTCCGTTCC TCGTTTCTGT GCTGATTCCG TCTTCCCTCT GCTTAATTTT 
450
CAAATCGATC CACCGGTTCA GAAGCTCTAC GTCACTGATA TCCATGGAGC 
500
TGTTTGGGAT TTCAGGCATA TCTATCGCGG TACACCGAGG CGTCACTTGC 
550
TAACAACGGG ATGGAGTAAG TTCGTCAATA GCAAGAAGCT CATCGCTGGA 
600
GATTCGGTGG TGTTTATGAG AAAATCTGCA GATGAGATGT TCATCGGCGT 
650
TAGGAGAACT CCGATCTCAA GCAGCGACGG AGGAAGTAGC TATTACGGAG 
700
GAGATGAGTA TAACGGTTAC TACAGTCAGA GTAGCGTTGC CAAGGAAGAT 
750
GATGGGAGTC CGAAGAAGAC GTTTAGGAGA TCTGGGAATG GTAAGTTGAC 
800
TGCTGAGGCT GTGACGGATG CGATCAATAG AGCGTCTCAG GGATTACCAT 
850
TTGAGGTGGT GTTTTATCCG GCTGCTGGAT GGTCTGAGTT TGTTGTGAGA 
900
GCTGAAGATG TTGAGTCTTC AATGTCTATG TATTGGACTC CTGGGACTCG 
950
AGTCAAGATG GCTATGGAGA CTGAAGATTC TTCTCGGATC ACATGGTTTC 
1000
AAGGCATCGT TTCCTCTACT TATCAGGAGA CCGGTCCATG GCGTGGATCT 
1050
CCATGGAAGC AGCTTCAGAT CACATGGGAT GAACCTGAGA TTCTGCAAAA 
1100
CGTGAAGAGG GTGAATCCAT GGCAAGTGGA AATTGCTGCA CATGCAACTC 
1150
AACTGCATAC CCCTTTCCCT CCAGCAAAGA GGTTGAAGTA TCCACAACCC 
1200
GGAGGAGGGT TCTTGAGTGG AGATGATGGA GAAATCCTTT ATCCTCAAAG 
1250
TGGACTGTCT AGTGCAGCAG CACCTGATCC AAGTCCTTCT ATGTTCTCGT 
1300
ATTCTACATT TCCTGCTGGC ATGCAGGGAG CCAGGCAATA TGATTTTGGG 
1350
TCTTTCAATC CAACCGGATT CATTGGAGGA AATCCTCCCC AGCTATTCAC 
1400
CAATAACTTC TTAAGTCCGC TTCCTGATTT GGGAAAAGTG TCGACTGAGA 
1450
TGATGAACTT TGGCAGTCCG CCATCAGATA ACTTATCGCC TAATAGCAAC 
1500
ACCACTAATC TGTCCTCTGG AAATGACCTG GTTGGAAACC GAGGCCCCCT 
1550
TTCAAAGAAA GTTAACTCGA TTCAGTTGTT TGGCAAGATC ATTACCGTGG 
1600
AGGAGCATTC TGAGAGCGGT CCTGCAGAGT CTGGCTTGTG TGAAGAGGAT 
1650
GGCAGCAAAG AGTCCAGCGA CAATGAGACA CAGTTGTCCT TATCACATGC 
1700
TCCTCCAAGC GTGCCTAAAC ATTCCAACAG CAACGCAGGT TCTAGCTCCC 
1750
AAGGTTAA
1800

>AT1G77850.1 longest ORF length:585
MSPPSATAGD INHREVDPTI WRACAGASVQ IPVLHSRVYY FPQGHVEHCC 
50
PLLSTLPSST SPVPCIITSI QLLADPVTDE VFAHLILQPM TQQQFTPTNY 
100
SRFGRFDGDV DDNNKVTTFA KILTPSDANN GGGFSVPRFC ADSVFPLLNF 
150
QIDPPVQKLY VTDIHGAVWD FRHIYRGTPR RHLLTTGWSK FVNSKKLIAG 
200
DSVVFMRKSA DEMFIGVRRT PISSSDGGSS YYGGDEYNGY YSQSSVAKED 
250
DGSPKKTFRR SGNGKLTAEA VTDAINRASQ GLPFEVVFYP AAGWSEFVVR 
300
AEDVESSMSM YWTPGTRVKM AMETEDSSRI TWFQGIVSST YQETGPWRGS 
350
PWKQLQITWD EPEILQNVKR VNPWQVEIAA HATQLHTPFP PAKRLKYPQP 
400
GGGFLSGDDG EILYPQSGLS SAAAPDPSPS MFSYSTFPAG MQGARQYDFG 
450
SFNPTGFIGG NPPQLFTNNF LSPLPDLGKV STEMMNFGSP PSDNLSPNSN 
500
TTNLSSGNDL VGNRGPLSKK VNSIQLFGKI ITVEEHSESG PAESGLCEED 
550
GSKESSDNET QLSLSHAPPS VPKHSNSNAG SSSQG
600