fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G78600 BBX22, DBB3, STH3, LZF1 SALT TOLERANCE HOMOLOG 3, DOUBLE B-BOX 3, B-box domain protein 22, light-regulated zinc finger protein 1 (.1.2)

>AT1G78600.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, EcoRI, EcoRV, HpaI, KpnI, NdeI, NheI, NotI, PacI, PvuII, SacI, SalI, SmaI, XbaI, XhoI
Name Recognition sequence Cut positions
BglII A|GATCT 682
HindIII A|AGCTT 511
NcoI C|CATGG 374
PstI CTGCA|G 686
SpeI A|CTAGT 643
StyI C|C[AT][AT]GG 374


Click here to view TAIR data

>AT1G78600.1 length:900
ATGAAGATTC AGTGTAACGT TTGTGAGGCG GCGGAAGCGA CGGTTCTATG 
50
TTGCGCCGAC GAGGCTGCTC TTTGTTGGGC TTGCGATGAG AAAATTCACG 
100
CCGCTAATAA ACTCGCCGGA AAACATCAGA GAGTCCCTCT CTCTGCCTCT 
150
GCCTCTTCCA TACCCAAATG TGACATTTGT CAGGAAGCAT CTGGATTCTT 
200
CTTTTGTCTG CAAGATAGAG CTTTGCTATG TAGGAAATGT GATGTTGCAA 
250
TCCACACTGT GAATCCTCAT GTTTCAGCTC ACCAGAGATT TCTTCTCACT 
300
GGAATCAAAG TTGGTCTTGA ATCTATAGAC ACTGGTCCTT CTACTAAATC 
350
CTCACCTACC AATGATGATA AAACCATGGA GACCAAACCT TTTGTTCAAT 
400
CTATACCTGA GCCTCAAAAG ATGGCCTTCG ATCATCATCA TCACCAGCAG 
450
CAGCAGGAAC AGCAGGAAGG AGTTATACCG GGAACTAAAG TCAATGATCA 
500
GACATCGACA AAGCTTCCTC TCGTAAGTAG CGGATCAACT ACTGGAAGCA 
550
TTCCTCAGTG GCAAATAGAG GAGATTTTCG GGCTAACCGA CTTTGATCAG 
600
AGCTATGAAT ACATGGAGAA TAATGGATCA TCTAAGGCGG ATACTAGTAG 
650
ACGAGGAGAT TCAGACAGTT CTTCGATGAT GAGATCTGCA GAAGAAGATG 
700
GAGAAGATAA CAATAACTGC TTGGGAGGTG AGACATCATG GGCGGTTCCA 
750
CAGATTCAGT CTCCACCTAC AGCGTCTGGT CTAAACTGGC CTAAGCATTT 
800
TCACCACCAC TCTGTGTTTG TTCCGGACAT AACTTCTTCA ACTCCTTATA 
850
CCGGTTCATC CCCGAATCAA AGGGTTGGGA AACGGCGGCG ACGGTTCTAG 
900

>AT1G78600.1 longest ORF length:299
MKIQCNVCEA AEATVLCCAD EAALCWACDE KIHAANKLAG KHQRVPLSAS 
50
ASSIPKCDIC QEASGFFFCL QDRALLCRKC DVAIHTVNPH VSAHQRFLLT 
100
GIKVGLESID TGPSTKSSPT NDDKTMETKP FVQSIPEPQK MAFDHHHHQQ 
150
QQEQQEGVIP GTKVNDQTST KLPLVSSGST TGSIPQWQIE EIFGLTDFDQ 
200
SYEYMENNGS SKADTSRRGD SDSSSMMRSA EEDGEDNNNC LGGETSWAVP 
250
QIQSPPTASG LNWPKHFHHH SVFVPDITSS TPYTGSSPNQ RVGKRRRRF
300