fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G79430 WDY, APL WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2)

>AT1G79430.1 CDS map

>>Show genomic map




Uncut enzymes: AscI, BamHI, EcoRV, HindIII, HpaI, KpnI, NdeI, NheI, NotI, PacI, PvuII, SacI, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
ApaI GGGCC|C 408
BglII A|GATCT 731
EcoRI G|AATTC 677
NcoI C|CATGG 131
PstI CTGCA|G 542
StyI C|C[AT][AT]GG 131, 805


Click here to view TAIR data

>AT1G79430.1 length:882
ATGAGAGTTA TGGGTGTGAA GGGTCTTACT CTTTACCACC TAAAGAGCCA 
50
TCTTCAGAAA TTCAGGCTTG GAAAGCAGCC GCACAAGGAG TACGGAGATC 
100
ACTCCACAAA GGAAGGTTCA AGAGCTTCTG CCATGGATAT TCAGCGCAAC 
150
GTAGCTTCTT CTTCTGGCAT GATGAGTCGC AACATGAATG AGATGCAAAT 
200
GGAAGTGCAG AGAAGGTTGC ATGAACAGCT AGAGGTGCAA AGACATCTGC 
250
AACTGAGGAT TGAAGCACAA GGAAAGTACA TGCAATCTAT CTTGGAGAGA 
300
GCTTGCCAAA CCCTAGCCGG TGAGAACATG GCAGCCGCCA CCGCAGCAGC 
350
CGCCGTCGGA GGAGGATACA AGGGTAATCT GGGAAGTTCG AGTCTTTCAG 
400
CAGCGGTGGG CCCACCTCCT CATCCTCTTA GTTTCCCGCC GTTTCAAGAC 
450
CTAAACATCT ATGGAAACAC AACCGACCAA GTCCTCGACC ATCACAACTT 
500
CCATCATCAA AACATAGAGA ACCATTTCAC GGGTAACAAT GCTGCAGACA 
550
CCAACATTTA CTTGGGGAAG AAGCGACCTA ATCCTAATTT TGGTAACGAT 
600
GTAAGGAAAG GACTATTGAT GTGGTCTGAT CAAGATCACG ATCTTTCCGC 
650
AAACCAATCG ATCGATGATG AGCATAGAAT TCAGATACAG ATGGCTACAC 
700
ATGTCTCCAC GGATTTGGAT TCTTTGTCGG AGATCTACGA AAGGAAATCA 
750
GGTTTATCAG GTGATGAAGG GAATAATGGT GGGAAATTAC TGGAAAGGCC 
800
ATCGCCTAGG AGATCACCAT TGAGTCCTAT GATGAACCCT AATGGTGGAT 
850
TAATACAAGG AAGAAACTCG CCATTTGGGT GA
900

>AT1G79430.1 longest ORF length:293
MRVMGVKGLT LYHLKSHLQK FRLGKQPHKE YGDHSTKEGS RASAMDIQRN 
50
VASSSGMMSR NMNEMQMEVQ RRLHEQLEVQ RHLQLRIEAQ GKYMQSILER 
100
ACQTLAGENM AAATAAAAVG GGYKGNLGSS SLSAAVGPPP HPLSFPPFQD 
150
LNIYGNTTDQ VLDHHNFHHQ NIENHFTGNN AADTNIYLGK KRPNPNFGND 
200
VRKGLLMWSD QDHDLSANQS IDDEHRIQIQ MATHVSTDLD SLSEIYERKS 
250
GLSGDEGNNG GKLLERPSPR RSPLSPMMNP NGGLIQGRNS PFG
300