fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G79430 WDY, APL WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2)

>AT1G79430.2 CDS map

>>Show genomic map




Uncut enzymes: AscI, BamHI, EcoRV, HindIII, HpaI, KpnI, NheI, NotI, PacI, PvuII, SacI, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
ApaI GGGCC|C 603
BglII A|GATCT 926
EcoRI G|AATTC 872
NcoI C|CATGG 326
NdeI CA|TATG 38
PstI CTGCA|G 737
StyI C|C[AT][AT]GG 326, 1000


Click here to view TAIR data

>AT1G79430.2 length:1077
ATGTTCCATG CTAAGAAACC TTCAAGTATG AATGGTTCAT ATGAGAACAG 
50
AGCTATGTGC GTTCAAGGCG ATTCAGGCCT TGTCCTCACC ACCGACCCTA 
100
AACCGCGTTT GCGTTGGACC GTCGAACTCC ACGAGCGTTT TGTGGACGCC 
150
GTCGCTCAGC TCGGCGGCCC CGACAAAGCG ACCCCAAAGA CGATTATGAG 
200
AGTTATGGGT GTGAAGGGTC TTACTCTTTA CCACCTAAAG AGCCATCTTC 
250
AGAAATTCAG GCTTGGAAAG CAGCCGCACA AGGAGTACGG AGATCACTCC 
300
ACAAAGGAAG GTTCAAGAGC TTCTGCCATG GATATTCAGC GCAACGTAGC 
350
TTCTTCTTCT GGCATGATGA GTCGCAACAT GAATGAGATG CAAATGGAAG 
400
TGCAGAGAAG GTTGCATGAA CAGCTAGAGG TGCAAAGACA TCTGCAACTG 
450
AGGATTGAAG CACAAGGAAA GTACATGCAA TCTATCTTGG AGAGAGCTTG 
500
CCAAACCCTA GCCGGTGAGA ACATGGCAGC CGCCACCGCA GCAGCCGCCG 
550
TCGGAGGAGG ATACAAGGGT AATCTGGGAA GTTCGAGTCT TTCAGCAGCG 
600
GTGGGCCCAC CTCCTCATCC TCTTAGTTTC CCGCCGTTTC AAGACCTAAA 
650
CATCTATGGA AACACAACCG ACCAAGTCCT CGACCATCAC AACTTCCATC 
700
ATCAAAACAT AGAGAACCAT TTCACGGGTA ACAATGCTGC AGACACCAAC 
750
ATTTACTTGG GGAAGAAGCG ACCTAATCCT AATTTTGGTA ACGATGTAAG 
800
GAAAGGACTA TTGATGTGGT CTGATCAAGA TCACGATCTT TCCGCAAACC 
850
AATCGATCGA TGATGAGCAT AGAATTCAGA TACAGATGGC TACACATGTC 
900
TCCACGGATT TGGATTCTTT GTCGGAGATC TACGAAAGGA AATCAGGTTT 
950
ATCAGGTGAT GAAGGGAATA ATGGTGGGAA ATTACTGGAA AGGCCATCGC 
1000
CTAGGAGATC ACCATTGAGT CCTATGATGA ACCCTAATGG TGGATTAATA 
1050
CAAGGAAGAA ACTCGCCATT TGGGTGA
1100

>AT1G79430.2 longest ORF length:358
MFHAKKPSSM NGSYENRAMC VQGDSGLVLT TDPKPRLRWT VELHERFVDA 
50
VAQLGGPDKA TPKTIMRVMG VKGLTLYHLK SHLQKFRLGK QPHKEYGDHS 
100
TKEGSRASAM DIQRNVASSS GMMSRNMNEM QMEVQRRLHE QLEVQRHLQL 
150
RIEAQGKYMQ SILERACQTL AGENMAAATA AAAVGGGYKG NLGSSSLSAA 
200
VGPPPHPLSF PPFQDLNIYG NTTDQVLDHH NFHHQNIENH FTGNNAADTN 
250
IYLGKKRPNP NFGNDVRKGL LMWSDQDHDL SANQSIDDEH RIQIQMATHV 
300
STDLDSLSEI YERKSGLSGD EGNNGGKLLE RPSPRRSPLS PMMNPNGGLI 
350
QGRNSPFG
400