fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G79700 Integrase-type DNA-binding superfamily protein (.1.2)

>AT1G79700.2 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, HindIII, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, SacI, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
EcoRV GAT|ATC 817
PvuII CAG|CTG 219
StyI C|C[AT][AT]GG 398


Click here to view TAIR data

>AT1G79700.2 length:942
ATGGCAAAAG TCTCTGGGAG GAGCAAGAAA ACAATCGTTG ACGATGAAAT 
50
CAGCGATAAA ACAGCGTCTG CGTCTGAGTC TGCGTCCATT GCCTTAACAT 
100
CCAAACGCAA ACGTAAGTCG CCGCCTCGAA ACGCTCCTCT TCAACGCAGC 
150
TCCCCTTACA GAGGCGTCAC AAGGCATAGA TGGACTGGGA GATACGAAGC 
200
GCATTTGTGG GATAAGAACA GCTGGAACGA TACACAGACC AAGAAAGGAC 
250
GTCAAGTTTA TCTAGGGGCT TACGACGAAG AAGAAGCAGC AGCACGTGCC 
300
TACGACTTAG CAGCATTGAA GTACTGGGGA CGAGACACAC TCTTGAACTT 
350
CCCTTTGCCG AGTTATGACG AAGACGTCAA AGAAATGGAA GGCCAATCCA 
400
AGGAAGAGTA TATTGGATCA TTGAGAAGAA AAAGTAGTGG ATTTTCTCGC 
450
GGTGTATCAA AATACAGAGG CGTTGCAAGG CATCACCATA ATGGGAGATG 
500
GGAAGCTAGA ATTGGAAGGG TGTTTGGTAA TAAATATCTA TATCTTGGAA 
550
CATACGCCAC GCAAGAAGAA GCAGCAATCG CCTACGACAT CGCGGCAATA 
600
GAGTACCGTG GACTTAACGC CGTTACCAAT TTCGACGTCA GCCGTTATCT 
650
AAACCCTAAC GCCGCCGCGG ATAAAGCCGA TTCCGATTCT AAGCCCATTC 
700
GAAGCCCTAG TCGCGAGCCC GAATCGTCGG ATGATAACAA ATCTCCGAAA 
750
TCAGAGGAAG TAATCGAACC ATCTACATCG CCGGAAGTGA TTCCAACTCG 
800
CCGGAGCTTC CCCGACGATA TCCAGACGTA TTTTGGGTGT CAAGATTCCG 
850
GCAAGTTAGC GACTGAGGAA GACGTAATAT TCGATTGTTT CAATTCTTAT 
900
ATAAATCCTG GCTTCTATAA CGAGTTTGAT TATGGACCTT AA
950

>AT1G79700.2 longest ORF length:313
MAKVSGRSKK TIVDDEISDK TASASESASI ALTSKRKRKS PPRNAPLQRS 
50
SPYRGVTRHR WTGRYEAHLW DKNSWNDTQT KKGRQVYLGA YDEEEAAARA 
100
YDLAALKYWG RDTLLNFPLP SYDEDVKEME GQSKEEYIGS LRRKSSGFSR 
150
GVSKYRGVAR HHHNGRWEAR IGRVFGNKYL YLGTYATQEE AAIAYDIAAI 
200
EYRGLNAVTN FDVSRYLNPN AAADKADSDS KPIRSPSREP ESSDDNKSPK 
250
SEEVIEPSTS PEVIPTRRSF PDDIQTYFGC QDSGKLATEE DVIFDCFNSY 
300
INPGFYNEFD YGP
350