fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G80580 Integrase-type DNA-binding superfamily protein (.1)

>AT1G80580.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, HindIII, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, XhoI
Name Recognition sequence Cut positions
EcoRV GAT|ATC 157
StyI C|C[AT][AT]GG 533
XbaI T|CTAGA 729


Click here to view TAIR data

>AT1G80580.1 length:771
ATGGAAAACA GCTACACCGT TGATGGTCAC CGTCTTCAAT ATTCCGTTCC 
50
GTTAAGCTCC ATGCATGAAA CCAGTCAAAA CTCCGAAACT TACGGATTAT 
100
CCAAAGAGTC GCCGTTGGTC TGCATGCCCT TGTTCGAAAC CAACACTACT 
150
TCATTCGATA TCTCTTCTCT TTTCTCGTTT AACCCAAAAC CAGAACCCGA 
200
AAACACGCAT CGTGTCATGG ACGATTCCAT CGCCGCCGTC GTGGGCGAAA 
250
ACGTTCTTTT CGGTGATAAA AACAAAGTCT CTGATCACTT GACCAAAGAA 
300
GGTGGTGTGA AGCGGGGGCG GAAGATGCCG CAGAAGACCG GAGGATTCAT 
350
GGGAGTGAGA AAACGGCCGT GGGGGAGATG GTCGGCGGAG ATAAGAGACA 
400
GGATAGGGCG GTGCAGACAC TGGTTAGGAA CGTTCGACAC GGCGGAAGAG 
450
GCAGCGCGTG CGTATGACGC GGCGGCGAGG AGGCTTAGAG GGACCAAAGC 
500
CAAGACCAAT TTCGTGATTC CTCCGCTTTT TCCCAAGGAA ATAGCTCAGG 
550
CTCAGGAGGA TAATAGGATG AGGCAGAAGC AGAAGAAGAA GAAGAAGAAA 
600
AAAGTGAGTG TGAGGAAGTG TGTTAAAGTC ACATCGGTTG CACAGTTGTT 
650
CGATGATGCC AATTTTATAA ATTCTTCTAG TATTAAAGGA AATGTGATTA 
700
GTTCTATTGA TAATCTTGAA AAAATGGGTC TAGAGCTTGA TTTGAGTTTA 
750
GGGTTGTTGT CTAGGAAGTG A
800

>AT1G80580.1 longest ORF length:256
MENSYTVDGH RLQYSVPLSS MHETSQNSET YGLSKESPLV CMPLFETNTT 
50
SFDISSLFSF NPKPEPENTH RVMDDSIAAV VGENVLFGDK NKVSDHLTKE 
100
GGVKRGRKMP QKTGGFMGVR KRPWGRWSAE IRDRIGRCRH WLGTFDTAEE 
150
AARAYDAAAR RLRGTKAKTN FVIPPLFPKE IAQAQEDNRM RQKQKKKKKK 
200
KVSVRKCVKV TSVAQLFDDA NFINSSSIKG NVISSIDNLE KMGLELDLSL 
250
GLLSRK
300