fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT2G01570 RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)

>AT2G01570.1 CDS map

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Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRV, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, XbaI
Name Recognition sequence Cut positions
EcoRI G|AATTC 1156
HindIII A|AGCTT 800, 944
HpaI GTT|AAC 1062
StyI C|C[AT][AT]GG 24, 993, 1659
XhoI C|TCGAG 504


Click here to view TAIR data

>AT2G01570.1 length:1764
ATGAAGAGAG ATCATCACCA ATTCCAAGGT CGATTGTCCA ACCACGGGAC 
50
TTCTTCTTCA TCATCATCAA TCTCTAAAGA TAAGATGATG ATGGTGAAAA 
100
AAGAAGAAGA CGGTGGAGGT AACATGGACG ACGAGCTTCT CGCTGTTTTA 
150
GGTTACAAAG TTAGGTCATC GGAGATGGCG GAGGTTGCTT TGAAACTCGA 
200
ACAATTAGAG ACGATGATGA GTAATGTTCA AGAAGATGGT TTATCTCATC 
250
TCGCGACGGA TACTGTTCAT TATAATCCGT CGGAGCTTTA TTCTTGGCTT 
300
GATAATATGC TCTCTGAGCT TAATCCTCCT CCTCTTCCGG CGAGTTCTAA 
350
CGGTTTAGAT CCGGTTCTTC CTTCGCCGGA GATTTGTGGT TTTCCGGCTT 
400
CGGATTATGA CCTTAAAGTC ATTCCCGGAA ACGCGATTTA TCAGTTTCCG 
450
GCGATTGATT CTTCGTCTTC GTCGAATAAT CAGAACAAGC GTTTGAAATC 
500
ATGCTCGAGT CCTGATTCTA TGGTTACATC GACTTCGACG GGTACGCAGA 
550
TTGGTGGAGT CATAGGAACG ACGGTGACGA CAACCACCAC GACAACGACG 
600
GCGGCGGGTG AGTCAACTCG TTCTGTTATC CTGGTTGACT CGCAAGAGAA 
650
CGGTGTTCGT TTAGTCCACG CGCTTATGGC TTGTGCAGAA GCAATCCAGC 
700
AGAACAATTT GACTCTAGCG GAAGCTCTTG TGAAGCAAAT CGGATGCTTA 
750
GCTGTGTCTC AAGCCGGAGC TATGAGAAAA GTGGCTACTT ACTTCGCCGA 
800
AGCTTTAGCG CGGCGGATCT ACCGTCTCTC TCCGCCGCAG AATCAGATCG 
850
ATCATTGTCT CTCCGATACT CTTCAGATGC ACTTTTACGA GACTTGTCCT 
900
TATCTTAAAT TCGCTCACTT CACGGCGAAC CAAGCGATTC TCGAAGCTTT 
950
TGAAGGTAAG AAGAGAGTAC ACGTCATTGA TTTCTCGATG AACCAAGGTC 
1000
TTCAATGGCC TGCACTTATG CAAGCTCTTG CGCTTCGAGA AGGAGGTCCT 
1050
CCAACTTTCC GGTTAACCGG AATTGGTCCA CCGGCGCCGG ATAATTCTGA 
1100
TCATCTTCAT GAAGTTGGTT GTAAATTAGC TCAGCTTGCG GAGGCGATTC 
1150
ACGTAGAATT CGAATACCGT GGATTCGTTG CTAACAGCTT AGCCGATCTC 
1200
GATGCTTCGA TGCTTGAGCT TAGACCGAGC GATACGGAAG CTGTTGCGGT 
1250
GAACTCTGTT TTTGAGCTAC ATAAGCTCTT AGGTCGTCCC GGTGGGATAG 
1300
AGAAAGTTCT CGGCGTTGTG AAACAGATTA AACCGGTGAT TTTCACGGTG 
1350
GTTGAGCAAG AATCGAACCA TAACGGACCG GTTTTCTTAG ACCGGTTTAC 
1400
TGAATCGTTA CATTATTATT CGACTCTGTT TGATTCGTTG GAAGGAGTTC 
1450
CGAATAGTCA AGACAAAGTC ATGTCTGAAG TTTACTTAGG GAAACAGATT 
1500
TGTAATCTGG TGGCTTGTGA AGGTCCTGAC AGAGTCGAGA GACACGAAAC 
1550
GTTGAGTCAA TGGGGAAACC GGTTTGGTTC GTCCGGTTTA GCGCCGGCAC 
1600
ATCTTGGGTC TAACGCGTTT AAGCAAGCGA GTATGCTTTT GTCTGTGTTT 
1650
AATAGTGGCC AAGGTTATCG TGTGGAGGAG AGTAATGGAT GTTTGATGTT 
1700
GGGTTGGCAC ACTCGTCCAC TCATTACCAC CTCCGCTTGG AAACTCTCGA 
1750
CGGCGGCGTA CTGA
1800

>AT2G01570.1 longest ORF length:587
MKRDHHQFQG RLSNHGTSSS SSSISKDKMM MVKKEEDGGG NMDDELLAVL 
50
GYKVRSSEMA EVALKLEQLE TMMSNVQEDG LSHLATDTVH YNPSELYSWL 
100
DNMLSELNPP PLPASSNGLD PVLPSPEICG FPASDYDLKV IPGNAIYQFP 
150
AIDSSSSSNN QNKRLKSCSS PDSMVTSTST GTQIGGVIGT TVTTTTTTTT 
200
AAGESTRSVI LVDSQENGVR LVHALMACAE AIQQNNLTLA EALVKQIGCL 
250
AVSQAGAMRK VATYFAEALA RRIYRLSPPQ NQIDHCLSDT LQMHFYETCP 
300
YLKFAHFTAN QAILEAFEGK KRVHVIDFSM NQGLQWPALM QALALREGGP 
350
PTFRLTGIGP PAPDNSDHLH EVGCKLAQLA EAIHVEFEYR GFVANSLADL 
400
DASMLELRPS DTEAVAVNSV FELHKLLGRP GGIEKVLGVV KQIKPVIFTV 
450
VEQESNHNGP VFLDRFTESL HYYSTLFDSL EGVPNSQDKV MSEVYLGKQI 
500
CNLVACEGPD RVERHETLSQ WGNRFGSSGL APAHLGSNAF KQASMLLSVF 
550
NSGQGYRVEE SNGCLMLGWH TRPLITTSAW KLSTAAY
600