|
|
|
|
|
|
|
|
| Locus | Common name | Short description |
| AT2G01940 | SGR5, ATIDD15 | SHOOT GRAVITROPISM 5, ARABIDOPSIS THALIANA INDETERMINATE\(ID\)-DOMAIN 15, C2H2-like zinc finger protein (.1.2.3) |
>AT2G01940.1 CDS map
>>Show genomic map
Uncut enzymes: ApaI, AscI, BamHI, EcoRI, EcoRV, HpaI, NheI, NotI, PacI, PvuII, SacI, SalI, SmaI, SpeI
| Name | Recognition sequence | Cut positions |
| BglII | A|GATCT | 227, 396 |
| HindIII | A|AGCTT | 298, 1040 |
| KpnI | GGTAC|C | 151 |
| NcoI | C|CATGG | 292 |
| NdeI | CA|TATG | 219 |
| PstI | CTGCA|G | 146 |
| StyI | C|C[AT][AT]GG | 237, 292 |
| XbaI | T|CTAGA | 667, 747 |
| XhoI | C|TCGAG | 1144 |
Click here to view TAIR data
>AT2G01940.1 length:1338
ATGAGAACAG ATCAAGTGAT GTTGTCCAAC AAGAACACAA ACACATGTTG | 50 |
TGTGGTTTCT TCTTCTTCTT CTGATCCTTT CCTCTCCTCT TCAGAAAATG | 100 |
GGGTCACCAC CACAAACACA TCCACTCAGA AGAGGAAAAG AAGACCTGCA | 150 |
GGTACCCCAG ATCCAGATGC AGAAGTTGTG TCTTTATCAC CAAGAACTCT | 200 |
TCTTGAATCA GACAGATACA TATGTGAGAT CTGTAACCAA GGGTTTCAAA | 250 |
GAGACCAGAA TCTCCAGATG CATAGAAGAC GTCACAAAGT TCCATGGAAG | 300 |
CTTCTTAAAA GAGACAACAA CATAGAGGTG AAGAAACGAG TCTATGTTTG | 350 |
CCCTGAACCC ACTTGCCTTC ACCATAATCC TTGTCATGCT CTGGGAGATC | 400 |
TTGTCGGCAT CAAAAAACAT TTCAGAAGAA AACATAGTAA CCATAAGCAA | 450 |
TGGGTTTGTG AGAGATGCTC TAAAGGTTAT GCTGTTCAAT CTGATTACAA | 500 |
AGCTCATCTC AAAACTTGTG GTACTAGAGG ACATTCTTGT GACTGTGGTC | 550 |
GTGTCTTCTC CAGGGTGGAG AGTTTTATTG AACATCAAGA TAATTGTTCC | 600 |
GCACGGAGAG TTCACCGTGA ACCGCCTCGA CCACCACAAA CCGCGGTAAC | 650 |
AGTCCCGGCA TGCTCTTCTA GAACCGCCTC AACCGTCAGC ACTCCGTCTA | 700 |
GTGAAACCAA TTACGGCGGT ACAGTTGCGG TTACGACTCC TCAACCTCTA | 750 |
GAAGGCCGTC CAATTCATCA GAGAATCTCA TCTTCAATTC TCACCAACTC | 800 |
ATCAAACAAT CTCAACCTCG AACTCCAACT TCTTCCATTA TCGTCGAATC | 850 |
AAAACCCTAA TCAAGAAAAC CAACAACAAA AAGTTAAAGA ACCATCTCAT | 900 |
CATCATAATC ATAATCATGA TACCACAAAC TTAAACCTCT CCATTGCACC | 950 |
ATCATCATCA TATCAACATT ACAACAACTT TGATCGTATA AAAGAGATTA | 1000 |
TGGCGAGCGA GCAAATTATG AAGATAGCGA TGAAGGAGAA AGCTTACGCT | 1050 |
GAGGAAGCTA AAAGAGAAGC CAAGAGGCAA CGAGAGATAG CGGAAAACGA | 1100 |
GTTTGCAAAT GCCAAAAAGA TTAGGCAAAA AGCACAAGCT GAACTCGAGA | 1150 |
GAGCTAAGTT TTTAAAGGAA CAATCTATGA AGAAGATAAG TTCAACGATC | 1200 |
ATGCAGGTCA CTTGTCAAAC ATGTAAAGGA CAGTTTCAAG CAGTTGCGGT | 1250 |
TCCGGCGGCT ACGGCTGATG AGACGTCTCT TGTCGTGAGT TACATGTCGT | 1300 |
CAGCGAATAC TGACGGAGAG TTGGAAAATG GTTTTTAA | 1350 |
>AT2G01940.1 longest ORF length:445
MRTDQVMLSN KNTNTCCVVS SSSSDPFLSS SENGVTTTNT STQKRKRRPA | 50 |
GTPDPDAEVV SLSPRTLLES DRYICEICNQ GFQRDQNLQM HRRRHKVPWK | 100 |
LLKRDNNIEV KKRVYVCPEP TCLHHNPCHA LGDLVGIKKH FRRKHSNHKQ | 150 |
WVCERCSKGY AVQSDYKAHL KTCGTRGHSC DCGRVFSRVE SFIEHQDNCS | 200 |
ARRVHREPPR PPQTAVTVPA CSSRTASTVS TPSSETNYGG TVAVTTPQPL | 250 |
EGRPIHQRIS SSILTNSSNN LNLELQLLPL SSNQNPNQEN QQQKVKEPSH | 300 |
HHNHNHDTTN LNLSIAPSSS YQHYNNFDRI KEIMASEQIM KIAMKEKAYA | 350 |
EEAKREAKRQ REIAENEFAN AKKIRQKAQA ELERAKFLKE QSMKKISSTI | 400 |
MQVTCQTCKG QFQAVAVPAA TADETSLVVS YMSSANTDGE LENGF | 450 |