fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT2G02070 ATIDD5 indeterminate(ID)-domain 5 (.1)

>AT2G02070.1 CDS map

>>Show genomic map




Uncut enzymes: AscI, BamHI, BglII, NheI, NotI, PacI, PstI, PvuII, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
ApaI GGGCC|C 752
EcoRI G|AATTC 1467
EcoRV GAT|ATC 1140
HindIII A|AGCTT 1413
HpaI GTT|AAC 1501
KpnI GGTAC|C 538
NcoI C|CATGG 316
NdeI CA|TATG 243
SacI GAGCT|C 1221
StyI C|C[AT][AT]GG 316, 732


Click here to view TAIR data

>AT2G02070.1 length:1809
ATGGCTGCTT CTTCATCCTC CGCTGCTTCC TTCTTTGGAG TCCGACAAGA 
50
TGACCAATCT CACCTCCTCC CACCTAATTC CTCCGCCGCT GCTCCTCCTC 
100
CTCCACCTCC TCACCACCAG GCACCGCTGC CACCGCTTGA AGCTCCACCG 
150
CAGAAAAAGA AGAGAAACCA ACCAAGAACT CCAAATTCCG ATGCGGAAGT 
200
GATAGCTTTA TCTCCAAAGA CACTAATGGC TACAAACAGA TTCATATGTG 
250
AAGTATGCAA CAAAGGGTTT CAAAGAGAAC AGAATCTACA ACTTCACCGA 
300
AGAGGACACA ATCTTCCATG GAAGCTCAAA CAGAAATCGA CCAAAGAAGT 
350
GAAGAGAAAA GTGTATCTTT GTCCGGAGCC CTCGTGCGTC CACCATGACC 
400
CGTCACGTGC TCTCGGAGAC CTCACCGGAA TCAAGAAACA TTATTACCGT 
450
AAACACGGTG AAAAGAAGTG GAAATGCGAT AAATGCTCTA AGCGTTACGC 
500
TGTTCAATCG GATTGGAAAG CTCACTCCAA GACTTGTGGT ACCAAAGAGT 
550
ATCGTTGTGA CTGTGGTACA CTCTTCTCTC GGCGAGACAG TTTCATCACA 
600
CATAGAGCTT TCTGTGACGC GTTGGCTCAA GAGAGTGCGA GACACCCAAC 
650
TTCATTGACT TCTTTGCCAA GTCATCACTT CCCGTACGGA CAAAACACAA 
700
ACAACTCCAA CAACAACGCT TCAAGCATGA TCCTTGGTCT GTCCCACATG 
750
GGGGCCCCAC AGAATCTTGA TCACCAGCCC GGTGACGTTC TCCGTCTTGG 
800
AAGCGGAGGA GGAGGAGGAG GAGCCGCTTC ACGCTCTTCT TCTGATCTCA 
850
TTGCTGCGAA TGCTTCAGGC TACTTCATGC AAGAGCAAAA CCCTAGCTTT 
900
CATGATCAAC AAGATCATCA TCATCATCAT CAACAAGGGT TTTTGGCTGG 
950
GAACAATAAC ATCAAGCAAT CACCAATGAG TTTTCAACAG AATCTGATGC 
1000
AGTTCTCACA TGATAACCAT AATTCTGCTC CCTCCAATGT CTTCAATCTC 
1050
AGCTTCCTCT CCGGAAACAA CGGAGTTACT TCTGCCACAA GTAACCCTAA 
1100
TGCTGCCGCC GCTGCTGCTG TTTCTTCTGG TAATCTTATG ATATCAAACC 
1150
ATTATGATGG CGAAAATGCT GTTGGAGGAG GAGGAGAAGG AAGCACTGGT 
1200
CTCTTCCCTA ACAATCTGAT GAGCTCGGCA GATAGAATTA GCTCAGGATC 
1250
AGTCCCTTCA CTCTTTAGCT CATCAATGCA AAGTCCAAAT TCAGCACCTC 
1300
ACATGTCAGC CACTGCCCTT CTACAGAAAG CTGCTCAAAT GGGTTCAACC 
1350
TCAAGCAACA ACAACAACGG AAGCAACACC AACAACAATA ACAATGCCTC 
1400
ATCGATCCTA AGAAGCTTTG GGAGTGGAAT CTACGGAGAA AATGAGAGTA 
1450
ATCTTCAGGA TTTGATGAAT TCTTTCTCTA ACCCCGGCGC AACGGGAAAC 
1500
GTTAACGGAG TTGATTCTCC TTTTGGTTCG TACGGAGGAG TGAACAAAGG 
1550
ATTAAGCGCT GACAAACAGA GCATGACTAG AGACTTTCTT GGAGTTGGAC 
1600
AGATCGTAAA AAGCATGAGT GGAAGCGGAG GGTTTCAACA ACAGCAACAA 
1650
CAGCAACAGC AGCAACAACA ACAACAACAA CATGGAAATA GTAGAGAAAG 
1700
AGTTGGCTCG TCGTCGGATT CCGCTGATAG AAGCAGCATG AATGTGAATA 
1750
CCGGAGGTGG TCCGGCAAGT ACTTCACCAC CTTATGGAAT CCATCATGCG 
1800
AGTTTCTAA
1850

>AT2G02070.1 longest ORF length:602
MAASSSSAAS FFGVRQDDQS HLLPPNSSAA APPPPPPHHQ APLPPLEAPP 
50
QKKKRNQPRT PNSDAEVIAL SPKTLMATNR FICEVCNKGF QREQNLQLHR 
100
RGHNLPWKLK QKSTKEVKRK VYLCPEPSCV HHDPSRALGD LTGIKKHYYR 
150
KHGEKKWKCD KCSKRYAVQS DWKAHSKTCG TKEYRCDCGT LFSRRDSFIT 
200
HRAFCDALAQ ESARHPTSLT SLPSHHFPYG QNTNNSNNNA SSMILGLSHM 
250
GAPQNLDHQP GDVLRLGSGG GGGGAASRSS SDLIAANASG YFMQEQNPSF 
300
HDQQDHHHHH QQGFLAGNNN IKQSPMSFQQ NLMQFSHDNH NSAPSNVFNL 
350
SFLSGNNGVT SATSNPNAAA AAAVSSGNLM ISNHYDGENA VGGGGEGSTG 
400
LFPNNLMSSA DRISSGSVPS LFSSSMQSPN SAPHMSATAL LQKAAQMGST 
450
SSNNNNGSNT NNNNNASSIL RSFGSGIYGE NESNLQDLMN SFSNPGATGN 
500
VNGVDSPFGS YGGVNKGLSA DKQSMTRDFL GVGQIVKSMS GSGGFQQQQQ 
550
QQQQQQQQQQ HGNSRERVGS SSDSADRSSM NVNTGGGPAS TSPPYGIHHA 
600
SF
650