|
|
|
|
|
|
|
|
| Locus | Common name | Short description |
| AT2G02080 | ATIDD4 | indeterminate(ID)-domain 4 (.1), indeterminate(ID)-domain 4 (.2) |
>AT2G02080.1 CDS map
>>Show genomic map
Uncut enzymes: ApaI, AscI, BglII, EcoRI, EcoRV, HindIII, NheI, NotI, PacI, PstI, SacI, SmaI, SpeI, XhoI
| Name | Recognition sequence | Cut positions |
| BamHI | G|GATCC | 1336 |
| HpaI | GTT|AAC | 1401 |
| KpnI | GGTAC|C | 571 |
| NcoI | C|CATGG | 322 |
| NdeI | CA|TATG | 249 |
| PvuII | CAG|CTG | 677 |
| SalI | G|TCGAC | 964 |
| StyI | C|C[AT][AT]GG | 322, 885 |
| XbaI | T|CTAGA | 583 |
Click here to view TAIR data
>AT2G02080.1 length:1551
ATGTCGTCAT CATCATATAA CACAAGCGTT ATTCCTTCAT CATCATCCTC | 50 |
TGCTCAGCCT TTCTTCATCA CCAGCTCCGG CACCGGAGAT AACGACTTTA | 100 |
ACCGGAAAGA TACTTTTATG TCAATGATTC AACAACCTAA CTCCTCAGCT | 150 |
CCACCACCCA AGAAACGAAG AAACCAACCC GGAAACCCAA ATCCTGATGC | 200 |
GGAAGTGGTA GCATTATCTC CAAAGACACT AATGGCTACA AACAGATTCA | 250 |
TATGCGATGT ATGTAACAAA GGGTTTCAAA GAGAACAAAA TCTACAGCTT | 300 |
CACCGAAGAG GACACAATCT CCCATGGAAG CTGAAACAAA AATCAACCAA | 350 |
AGAAGTGAAG AGGAAAGTGT ATCTTTGTCC GGAGCCAACG TGCGTTCACC | 400 |
ATGACCCGTC ACGTGCTCTC GGAGACCTCA CCGGAATCAA GAAGCATTAT | 450 |
TACCGTAAAC ATGGCGAAAA GAAGTGGAAA TGTGAGAAAT GTTCTAAGCG | 500 |
TTACGCTGTT CAATCAGATT GGAAAGCTCA CTCTAAGACT TGTGGTACTA | 550 |
AAGAGTATCG ATGTGACTGT GGTACCATCT TCTCTAGACG TGATAGTTAC | 600 |
ATCACGCATA GGGCTTTCTG CGATGCATTG ATACAAGAGA CTGCAAGAAA | 650 |
CCCTACCGTG AGCTTTACGT CAATGACAGC TGCTAGTAGT GGTGTCGGCT | 700 |
CCGGCGGAAT CTACGGGAGA CTTGGCGGTG GCAGTGCTCT CTCACACCAC | 750 |
CATTTGAGTG ACCATCCAAA TTTTGGATTT AACCCTCTCG TGGGTTACAA | 800 |
TCTGAACATT GCATCTTCTG ATAATAGGAG AGACTTTATT CCGCAATCAT | 850 |
CAAACCCTAA CTTCCTAATC CAAAGCGCTT CGAGCCAAGG AATGTTGAAT | 900 |
ACAACGCCAA ACAACAATAA CCAGAGTTTC ATGAACCAGC ATGGTCTGAT | 950 |
ACAGTTTGAT CCAGTCGACA ACATCAACCT CAAGAGTAGC GGCACCAACA | 1000 |
ACAGCTTCTT CAACCTCGGA TTCTTTCAAG AAAACACGAA GAACTCAGAG | 1050 |
ACGAGTCTTC CTTCTCTATA TAGCACCGAC GTTCTTGTTC ATCACCGTGA | 1100 |
AGAAAACTTG AACGCGGGTT CTAACGTGTC AGCCACGGCA CTACTTCAGA | 1150 |
AAGCTACACA AATGGGTTCA GTCACAAGCA ACGACCCATC TGCTTTGTTC | 1200 |
AGAGGCTTAG CTTCTTCGTC TAACTCATCA AGTGTTATCG CTAATCACTT | 1250 |
TGGTGGAGGA CGAATTATGG AGAATGATAA TAATGGAAAC CTTCAAGGTC | 1300 |
TAATGAACTC ATTAGCCGCC GTTAATGGAG GTGGCGGATC CGGTGGCAGT | 1350 |
ATCTTCGACG TTCAATTTGG AGACAATGGA AATATGAGCG GCTCGGACAA | 1400 |
GTTAACGTTA GATTTTCTTG GAGTTGGAGG AATGGTGAGA AATGTAAATC | 1450 |
GCGGTGGTGG TGGTGGTGGT CGCGGCAGTG CTCGTGGCGG AGTTTCTTTG | 1500 |
GATGGTGAGG CGAAGTTTCC TGAGCAAAAT TATCCATTTG GAAGAGGTTG | 1550 |
A | 1600 |
>AT2G02080.1 longest ORF length:516
MSSSSYNTSV IPSSSSSAQP FFITSSGTGD NDFNRKDTFM SMIQQPNSSA | 50 |
PPPKKRRNQP GNPNPDAEVV ALSPKTLMAT NRFICDVCNK GFQREQNLQL | 100 |
HRRGHNLPWK LKQKSTKEVK RKVYLCPEPT CVHHDPSRAL GDLTGIKKHY | 150 |
YRKHGEKKWK CEKCSKRYAV QSDWKAHSKT CGTKEYRCDC GTIFSRRDSY | 200 |
ITHRAFCDAL IQETARNPTV SFTSMTAASS GVGSGGIYGR LGGGSALSHH | 250 |
HLSDHPNFGF NPLVGYNLNI ASSDNRRDFI PQSSNPNFLI QSASSQGMLN | 300 |
TTPNNNNQSF MNQHGLIQFD PVDNINLKSS GTNNSFFNLG FFQENTKNSE | 350 |
TSLPSLYSTD VLVHHREENL NAGSNVSATA LLQKATQMGS VTSNDPSALF | 400 |
RGLASSSNSS SVIANHFGGG RIMENDNNGN LQGLMNSLAA VNGGGGSGGS | 450 |
IFDVQFGDNG NMSGSDKLTL DFLGVGGMVR NVNRGGGGGG RGSARGGVSL | 500 |
DGEAKFPEQN YPFGRG | 550 |