fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT2G02080 ATIDD4 indeterminate(ID)-domain 4 (.1), indeterminate(ID)-domain 4 (.2)

>AT2G02080.2 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BglII, EcoRI, EcoRV, HindIII, NheI, NotI, PacI, PstI, SacI, SmaI, SpeI, XhoI
Name Recognition sequence Cut positions
BamHI G|GATCC 1105
HpaI GTT|AAC 1170
KpnI GGTAC|C 340
NcoI C|CATGG 91
NdeI CA|TATG 18
PvuII CAG|CTG 446
SalI G|TCGAC 733
StyI C|C[AT][AT]GG 91, 654
XbaI T|CTAGA 352


Click here to view TAIR data

>AT2G02080.2 length:1320
ATGGCTACAA ACAGATTCAT ATGCGATGTA TGTAACAAAG GGTTTCAAAG 
50
AGAACAAAAT CTACAGCTTC ACCGAAGAGG ACACAATCTC CCATGGAAGC 
100
TGAAACAAAA ATCAACCAAA GAAGTGAAGA GGAAAGTGTA TCTTTGTCCG 
150
GAGCCAACGT GCGTTCACCA TGACCCGTCA CGTGCTCTCG GAGACCTCAC 
200
CGGAATCAAG AAGCATTATT ACCGTAAACA TGGCGAAAAG AAGTGGAAAT 
250
GTGAGAAATG TTCTAAGCGT TACGCTGTTC AATCAGATTG GAAAGCTCAC 
300
TCTAAGACTT GTGGTACTAA AGAGTATCGA TGTGACTGTG GTACCATCTT 
350
CTCTAGACGT GATAGTTACA TCACGCATAG GGCTTTCTGC GATGCATTGA 
400
TACAAGAGAC TGCAAGAAAC CCTACCGTGA GCTTTACGTC AATGACAGCT 
450
GCTAGTAGTG GTGTCGGCTC CGGCGGAATC TACGGGAGAC TTGGCGGTGG 
500
CAGTGCTCTC TCACACCACC ATTTGAGTGA CCATCCAAAT TTTGGATTTA 
550
ACCCTCTCGT GGGTTACAAT CTGAACATTG CATCTTCTGA TAATAGGAGA 
600
GACTTTATTC CGCAATCATC AAACCCTAAC TTCCTAATCC AAAGCGCTTC 
650
GAGCCAAGGA ATGTTGAATA CAACGCCAAA CAACAATAAC CAGAGTTTCA 
700
TGAACCAGCA TGGTCTGATA CAGTTTGATC CAGTCGACAA CATCAACCTC 
750
AAGAGTAGCG GCACCAACAA CAGCTTCTTC AACCTCGGAT TCTTTCAAGA 
800
AAACACGAAG AACTCAGAGA CGAGTCTTCC TTCTCTATAT AGCACCGACG 
850
TTCTTGTTCA TCACCGTGAA GAAAACTTGA ACGCGGGTTC TAACGTGTCA 
900
GCCACGGCAC TACTTCAGAA AGCTACACAA ATGGGTTCAG TCACAAGCAA 
950
CGACCCATCT GCTTTGTTCA GAGGCTTAGC TTCTTCGTCT AACTCATCAA 
1000
GTGTTATCGC TAATCACTTT GGTGGAGGAC GAATTATGGA GAATGATAAT 
1050
AATGGAAACC TTCAAGGTCT AATGAACTCA TTAGCCGCCG TTAATGGAGG 
1100
TGGCGGATCC GGTGGCAGTA TCTTCGACGT TCAATTTGGA GACAATGGAA 
1150
ATATGAGCGG CTCGGACAAG TTAACGTTAG ATTTTCTTGG AGTTGGAGGA 
1200
ATGGTGAGAA ATGTAAATCG CGGTGGTGGT GGTGGTGGTC GCGGCAGTGC 
1250
TCGTGGCGGA GTTTCTTTGG ATGGTGAGGC GAAGTTTCCT GAGCAAAATT 
1300
ATCCATTTGG AAGAGGTTGA 
1350

>AT2G02080.2 longest ORF length:439
MATNRFICDV CNKGFQREQN LQLHRRGHNL PWKLKQKSTK EVKRKVYLCP 
50
EPTCVHHDPS RALGDLTGIK KHYYRKHGEK KWKCEKCSKR YAVQSDWKAH 
100
SKTCGTKEYR CDCGTIFSRR DSYITHRAFC DALIQETARN PTVSFTSMTA 
150
ASSGVGSGGI YGRLGGGSAL SHHHLSDHPN FGFNPLVGYN LNIASSDNRR 
200
DFIPQSSNPN FLIQSASSQG MLNTTPNNNN QSFMNQHGLI QFDPVDNINL 
250
KSSGTNNSFF NLGFFQENTK NSETSLPSLY STDVLVHHRE ENLNAGSNVS 
300
ATALLQKATQ MGSVTSNDPS ALFRGLASSS NSSSVIANHF GGGRIMENDN 
350
NGNLQGLMNS LAAVNGGGGS GGSIFDVQFG DNGNMSGSDK LTLDFLGVGG 
400
MVRNVNRGGG GGGRGSARGG VSLDGEAKFP EQNYPFGRG
450