fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT2G03500 Homeodomain-like superfamily protein (.1)

>AT2G03500.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, EcoRV, HpaI, KpnI, NcoI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
BglII A|GATCT 111
EcoRI G|AATTC 1057
HindIII A|AGCTT 21, 103
NdeI CA|TATG 933
StyI C|C[AT][AT]GG 924


Click here to view TAIR data

>AT2G03500.1 length:1299
ATGGCGTCCT CATCAGAACT AAGCTTGGAT TGCAAGCCAC AAAGCTACTC 
50
TATGCTTTTG AAATCCTTTG GAGATAACTT TCAGAGCGAT CCAACCACAC 
100
ATAAGCTTGA AGATCTTCTC TCTCGCCTAG AACAAGAACG TCTCAAGATC 
150
GATGCCTTCA AACGCGAGCT TCCCCTTTGC ATGCAACTCC TTAACAATGC 
200
TGTGGAAGTT TACAAACAAC AACTAGAAGC ATATAGAGCA AATAGTAATA 
250
ACAATAACCA AAGTGTTGGT ACAAGACCAG TTCTCGAAGA GTTCATACCC 
300
TTAAGGAACC AACCCGAAAA GACAAACAAC AAAGGAAGTA ATTGGATGAC 
350
GACTGCTCAG CTATGGAGCC AATCCGAAAC CAAACCAAAA AACATTGATT 
400
CAACTACTGA TCAATCTCTT CCCAAAGACG AGATTAATAG TAGTCCGAAA 
450
CTCGGACATT TTGATGCAAA ACAAAGAAAT GGCAGCGGTG CTTTTCTTCC 
500
CTTCTCTAAG GAACAATCTT TGCCTGAATT AGCTCTATCC ACGGAGGTCA 
550
AGAGGGTCTC TCCGACCAAC GAACATACTA ATGGCCAAGA CGGTAATGAT 
600
GAGAGCATGA TCAACAATGA TAATAACTAT AATAATAATA ATAATAACAA 
650
TTCGAACAGC AATGGAGTTT CTTCTACAAC GAGTCAAAGT AATAGAAAGG 
700
CACGACGTTG CTGGTCGCCG GACTTGCACC GGAGATTTGT CCAAGCTCTT 
750
CAAATGCTTG GTGGCTCGCA AGTGGCTACA CCTAAACAAA TAAGGGAACT 
800
CATGAAAGTT GATGGTTTGA CCAATGATGA AGTCAAAAGC CATCTCCAGA 
850
AGTATCGGCT TCACACTAGA AGACCAAGCC CAAGCCCACA AACGTCAGGT 
900
GGGCCAGGTC CACATTTGGT GGTCCTAGGT GGCATATGGG TTCCACCGGA 
950
GTACACCTCC GCACATGGTG GCACTCCGAC TCTCTACCAC CACCAAGTCC 
1000
ACCACCACCA TACCAACACG GCAGGGCCGC CTCCACCACA CTTTTGCTCC 
1050
TCTCAAGAAT TCTACACAAC TCCACCGCCT CCTCAGCCGC TCCACCACCA 
1100
CCACTTTCAA ACGTTTAACG GTTCATCCGG TGGCACCGCC TCTACCGATT 
1150
CTACTCATCA TCAGGTGACG GACAGTCCCA CAGTTGAAGG GAAGTCACCG 
1200
GAGAGTGGTG GTGGAGAGAG AAAAGGGTTG GCTGCTCTTA GGGAAGAATG 
1250
TGAAGATCAC AGCAATATTA ATGGAAGTGA AATAACTCTC AAATTCTAA
1300

>AT2G03500.1 longest ORF length:432
MASSSELSLD CKPQSYSMLL KSFGDNFQSD PTTHKLEDLL SRLEQERLKI 
50
DAFKRELPLC MQLLNNAVEV YKQQLEAYRA NSNNNNQSVG TRPVLEEFIP 
100
LRNQPEKTNN KGSNWMTTAQ LWSQSETKPK NIDSTTDQSL PKDEINSSPK 
150
LGHFDAKQRN GSGAFLPFSK EQSLPELALS TEVKRVSPTN EHTNGQDGND 
200
ESMINNDNNY NNNNNNNSNS NGVSSTTSQS NRKARRCWSP DLHRRFVQAL 
250
QMLGGSQVAT PKQIRELMKV DGLTNDEVKS HLQKYRLHTR RPSPSPQTSG 
300
GPGPHLVVLG GIWVPPEYTS AHGGTPTLYH HQVHHHHTNT AGPPPPHFCS 
350
SQEFYTTPPP PQPLHHHHFQ TFNGSSGGTA STDSTHHQVT DSPTVEGKSP 
400
ESGGGERKGL AALREECEDH SNINGSEITL KF
450