fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT2G04890 SCL21 SCARECROW-like 21 (.1)

>AT2G04890.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, EcoRV, HindIII, HpaI, KpnI, NdeI, NheI, NotI, PacI, PstI, PvuII, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
NcoI C|CATGG 1079
SacI GAGCT|C 1107
StyI C|C[AT][AT]GG 723, 883, 1079, 1194


Click here to view TAIR data

>AT2G04890.1 length:1242
ATGGACAATG TAAGAGGTTC AATAATGTTG CAGCCACTGC CAGAGATAGC 
50
TGAGAGTATC GATGATGCTA TCTGCCATGA ACTCTCCATG TGGCCTGATG 
100
ATGCTAAAGA TTTGTTATTG ATAGTGGAGG CAATATCAAG GGGAGACTTG 
150
AAGTTGGTAC TTGTTGCTTG TGCAAAAGCT GTTTCTGAGA ATAATCTTCT 
200
AATGGCACGA TGGTGTATGG GTGAGTTGCG CGGTATGGTT TCGATTTCTG 
250
GTGAGCCAAT CCAGAGATTG GGAGCTTATA TGTTAGAAGG GCTTGTTGCT 
300
AGGCTTGCTG CTTCTGGTAG TTCGATATAT AAGTCTCTCC AGTCCAGAGA 
350
ACCAGAGAGT TATGAATTTT TATCTTATGT GTATGTTCTG CATGAGGTTT 
400
GTCCATATTT CAAGTTTGGA TACATGTCAG CGAATGGTGC GATTGCAGAA 
450
GCAATGAAGG ATGAAGAGAG GATTCACATT ATTGACTTCC AAATTGGACA 
500
AGGGAGCCAG TGGATAGCAC TTATCCAGGC TTTTGCAGCT AGGCCTGGTG 
550
GGGCTCCAAA TATTCGAATT ACCGGAGTTG GTGATGGATC TGTCTTGGTT 
600
ACAGTCAAGA AGAGACTAGA GAAACTTGCA AAGAAGTTTG ATGTTCCATT 
650
CAGGTTCAAT GCGGTTTCAA GGCCAAGTTG TGAAGTTGAA GTGGAAAATC 
700
TTGATGTCCG AGATGGCGAA GCCCTTGGAG TGAACTTTGC TTACATGCTG 
750
CATCATTTGC CAGATGAGAG TGTAAGCATG GAAAACCACA GGGACCGGTT 
800
GCTGAGGATG GTGAAGAGTC TATCACCTAA AGTAGTCACT CTTGTGGAAC 
850
AAGAATGCAA CACGAACACT TCCCCTTTCC TTCCTAGGTT CCTTGAGACA 
900
TTAAGTTATT ACACGGCAAT GTTCGAATCT ATCGATGTTA TGCTTCCGAG 
950
AAATCACAAG GAAAGGATCA ATATCGAGCA GCACTGCATG GCAAGGGATG 
1000
TCGTCAACAT CATAGCTTGT GAAGGAGCCG AGAGGATCGA AAGACACGAG 
1050
CTTCTCGGGA AATGGAAGTC AAGGTTTTCC ATGGCGGGTT TTGAGCCATA 
1100
CCCCTTGAGC TCAATCATTT CAGCCACCAT TAGAGCCCTC TTGAGAGATT 
1150
ACAGCAACGG GTATGCGATT GAAGAAAGAG ATGGTGCTCT GTACCTTGGT 
1200
TGGATGGACC GAATCTTGGT CTCATCTTGT GCATGGAAGT GA
1250

>AT2G04890.1 longest ORF length:413
MDNVRGSIML QPLPEIAESI DDAICHELSM WPDDAKDLLL IVEAISRGDL 
50
KLVLVACAKA VSENNLLMAR WCMGELRGMV SISGEPIQRL GAYMLEGLVA 
100
RLAASGSSIY KSLQSREPES YEFLSYVYVL HEVCPYFKFG YMSANGAIAE 
150
AMKDEERIHI IDFQIGQGSQ WIALIQAFAA RPGGAPNIRI TGVGDGSVLV 
200
TVKKRLEKLA KKFDVPFRFN AVSRPSCEVE VENLDVRDGE ALGVNFAYML 
250
HHLPDESVSM ENHRDRLLRM VKSLSPKVVT LVEQECNTNT SPFLPRFLET 
300
LSYYTAMFES IDVMLPRNHK ERINIEQHCM ARDVVNIIAC EGAERIERHE 
350
LLGKWKSRFS MAGFEPYPLS SIISATIRAL LRDYSNGYAI EERDGALYLG 
400
WMDRILVSSC AWK
450