fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT2G16400 BLH7 BEL1-like homeodomain 7 (.1)

>AT2G16400.1 CDS map

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Uncut enzymes: AatII, Acc65I, AccI, AciI, AfeI, AflIII, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AvaII, AvrII, BaeI, BamHI, BanI, BanII, BbsI, BbvI, BcgI, BciVI, BglI, BglII, BlpI, BmrI, BpmI, BsaAI, BsaBI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsiHKAI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, Bsp1286I, BspMI, BspT107I(HgiCI), BsrBI, BssHII, BstBI, BstXI, BstYI, BstZ17I, Bsu36I, BtrI, BtsI, DraI, DraIII, DrdI, EagI, EarI, EciI, EcoNI, EcoO109I, FauI, FokI, FseI, FspI, HaeII, HgaI, HincII, HindIII, HpaI, HphI, Hpy99I, I-CeuI, I-SceI, KasI, KpnI, MboII, MluI, MlyI, MnlI, NaeI, , NarI, NdeI, NgoMIV, NheI, NotI, NruI, PI-PspI, PI-SceI(VDE), PacI, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspOMI, PstI, PvuI, PvuII, RsrII, SacI, SacII, SalI, SapI, SbfI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, StuI, SwaI, Tth111I, XbaI, XmaI
Name Recognition sequence Cut positions
AccII(FnuDII) CG|CG 866, 1014
AccIII(BspMII) T|CCGGA 703
AclI AA|CGTT 1284
AflII C|TTAAG 687
AgeI A|CCGGT 1229
AluI AG|CT 263, 364, 375, 406, 1137, 1441
ApoI Pu|AATTPy 49, 81, 1063, 1299
AseI AT|TAAT 442
AvaI C|PyCGPuG 669, 1362
BalI TGG|CCA 2
BbvCI CC|TCAGC 262
BclI T|GATCA 795
BfaI C|TAG 102, 963, 1152
BsaHI GPu|CGPyC 251
BsaJI C|CNNGG 57, 159, 984, 1218
BsaWI [AT]|CCGG[AT] 703, 1229, 1330
BslI CCNNNNN|NNGG 670, 867, 989, 1165, 1329
BsoBI C|PyCGPuG 669, 1362
BspDI AT|CGAT 537
BspEI T|CCGGA 703
BspHI T|CATGA 1235
BsrDI GCAATGNN| 69
BsrFI Pu|CCGGPy 1229
BsrGI T|GTACA 1052
BsrI ACTGGN| 19, 1001
BssKI |CCNGG 57, 239, 989, 1176
BssSI C|TCGTG 1310
BstAPI GCANNNN|NTGC 509
BstEII G|GTNACC 1226
BstF5I GGATGNN| 623, 694, 748, 1275
BstNI CC|[AT]GG 57, 989, 1176
BstUI CG|CG 866, 1014
BtgI C|CPuPyGG 1218
Cac8I GCN|NGC 266, 960, 1186
Cfr10I [AG]|CCGG[TC] 1229
ClaI AT|CGAT 537
DdeI C|TNAG 261, 1147
DpnI GA-CH3|TC 209, 750, 794, 952, 1088, 1370
DpnII |GATC 209, 750, 794, 952, 1088, 1370
EaeI Py|GGCCPu 2
EcoRI G|AATTC 1063, 1299
EcoRV GAT|ATC 699
Fnu4HI GC|NGC 366, 630, 824, 857, 1139
HaeIII GG|CC 1, 257, 858, 986, 1213
HhaI GCG|C 653, 1013
HinP1I G|CGC 653, 1013
HinfI G|ANTC 108, 140, 185, 192, 230, 461, 879, 942, 1130, 1149, 1292
HpaII C|CGG 239, 618, 702, 1228, 1329
Hpy188I TCN|GA 467, 581, 659, 753, 945, 1104, 1295, 1302
HpyCH4III ACN|GT 390, 1209, 1376
HpyCH4IV A|CGT 1283
HpyCH4V TG|CA 307, 510, 585, 822, 840, 1072, 1077, 1140, 1428
MboI |GATC 209, 750, 794, 952, 1088, 1370
MfeI C|AATTG 1423
MscI TGG|CCA 2
MseI T|TAA 393, 399, 441, 686, 782, 1280, 1382
MslI CAPyNN|NNPuTG 1223, 1240
MspA1I C[AC]G|C[GT]G 826
MspI C|CGG 239, 618, 702, 1228, 1329
MwoI GCNNNNN|NNGC 422, 509, 914
N.BstNBI GAGTCNNNN|N 1154
NciI CC|[CG]GG 239
NcoI C|CATGG 1218
NlaIII CATG| 955, 1169, 1195, 1217, 1234, 1249, 1430
NlaIV GGN|NCC 1366
NsiI ATGCA|T 1073
NspI PuCATG|Py 1170
PaeR7I C|TCGAG 669
PspGI |CC[AT]GG 57, 989, 1176
RsaI GT|AC 1051, 1172, 1378
Sau3AI |GATC 209, 750, 794, 952, 1088, 1370
Sau96I G|GNCC 1214
ScaI AGT|ACT 1379
ScrFI CC|NGG 57, 239, 989, 1176
SexAI A|CC[AT]GGT 1177
SfcI C|TPuPyAG 1375
SmlI C|TPyPuAG 24, 371, 491, 669, 687
StyI C|C[AT][AT]GG 159, 1218
Taqƒ¿I T|CGA 281, 334, 524, 536, 606, 668, 995
TfiI G|A[AT]TC 108, 140, 185, 192, 230, 461, 879, 942, 1130, 1292
TliI C|TCGAG 669
TseI G|C[AT]GC 366, 630, 824, 1139
Tsp45I |GT[CG]AC 125, 1225, 1242
Tsp509I |AATT 48, 80, 507, 560, 1062, 1298, 1422
TspRI NNCA[CG]TGNN| 1212
XcmI CCANNNNN|NNNNTGG 1410
XhoI C|TCGAG 669
XmnI GAANN|NNTTC 235, 1003


Click here to view TAIR data

>AT2G16400.1 length:1449
ATGGCCACTT ATTACAAAAC TGGCTCAAGT GAGATTTATT CCAGACCAGA 
50
ATTTGTCCCT GGAAACGCAA TGAACTACAC AAATTCTTTC ACAGAGACAT 
100
TTCCTAGAGA TTCAACTAAT AATGTGTCAC CTTCAAAAGA GATTCAAGTG 
150
TTGTCAAGCC TTGGTGGAGT TTCACAAATG GTTGAGATTC AAGATTCTGG 
200
TTCTTGGAGA GATCAAGAAG ACAATGACAG GAATCGCTTC CCGGTGATGA 
250
GGCGTCTTGG CCTCAGCTCG CAGATTGAGA CATCGAGAGG CAATAATAAC 
300
AATGAGTATG CAACACAGGT TGTTTCGGGA TTTACTCGAA CCATTCACAA 
350
CTCAAAGTAT CTCAAAGCTG CTCAAGAGCT TCTTGATGAA ACTGTTAATG 
400
TTAAGAAAGC TCTAAAGCAG TTTCAGCCAG AGGGAGATAA GATTAATGAA 
450
GTGAAAGAGA AGAATCTTCA GACGAATACT GCTGAAATCC CTCAAGCAGA 
500
GAGGCAAGAA TTGCAGAGCA AGTTGTCGAA ACTTTTATCG ATATTAGACG 
550
AGGTGGATAG AAATTACAAG CAGTATTACC ATCAGATGCA GATAGTCGTG 
600
TCGTCTTTCG ATGTAATAGC CGGATGTGGA GCAGCCAAAC CATACACAGC 
650
CCTTGCGCTT CAGACCATCT CGAGGCATTT CCGTTGCTTA AGGGATGCGA 
700
TATCCGGACA AATCTTGGTG ATAAGGAAAA GTTTAGGAGG GGAACAGGAT 
750
GGATCAGATG GGAGAGGAGT GGGGATAAGC AGGTTAAGGA ATGTTGATCA 
800
ACAGGTAAGG CAACAAAGAG CGTTGCAGCG GTTAGGTGTG ATGCAACCTC 
850
ACACTTGGCG GCCTCAACGC GGTTTACCAG ATTCTTCTGT TTTGGTTCTC 
900
CGTGCTTGGC TATTTGAGCA TTTCCTCCAC CCTTATCCAA AGGATTCAGA 
950
CAAGATCATG CTCGCTAGAC AAACGGGGTT GAGCCGAGGC CAGGTATCGA 
1000
ACTGGTTCAT AAATGCGCGT GTGCGTCTCT GGAAACCGAT GGTGGAGGAG 
1050
ATGTACAAGG AGGAATTCAC AGATGCATTG CAGGAGAATG ATCCCAACCA 
1100
GTCTTCTGAA AACACACCAG AAATCACCGA GATTCAAGAG CTGCAAACTG 
1150
AGTCTAGTTC CAACAATGGG CATGTACCTG GTGTGGCAAG CAGTAGCATG 
1200
AGACAAAACA CAGTGGCCCA TGGTGGTGAC CGGTTCATGA TGGTGACTGA 
1250
CATGACAAGA AATGGTAATG GTGGGATGTC TTTAACGTTG GGGATTCAGA 
1300
ATTCCGATGC TCGTGGCGAT GTTCCTATGT CCGGTGGGAT AGATAACTAC 
1350
AAGAATACCA TCTCGGGAAC CGATCTACAG TACTTAAACT CTCGCAACCA 
1400
CCAGCACCAG ATTGGCTCTT CACAATTGTT GCATGATTTT GTAGCTTGA
1450

>AT2G16400.1 longest ORF length:482
MATYYKTGSS EIYSRPEFVP GNAMNYTNSF TETFPRDSTN NVSPSKEIQV 
50
LSSLGGVSQM VEIQDSGSWR DQEDNDRNRF PVMRRLGLSS QIETSRGNNN 
100
NEYATQVVSG FTRTIHNSKY LKAAQELLDE TVNVKKALKQ FQPEGDKINE 
150
VKEKNLQTNT AEIPQAERQE LQSKLSKLLS ILDEVDRNYK QYYHQMQIVV 
200
SSFDVIAGCG AAKPYTALAL QTISRHFRCL RDAISGQILV IRKSLGGEQD 
250
GSDGRGVGIS RLRNVDQQVR QQRALQRLGV MQPHTWRPQR GLPDSSVLVL 
300
RAWLFEHFLH PYPKDSDKIM LARQTGLSRG QVSNWFINAR VRLWKPMVEE 
350
MYKEEFTDAL QENDPNQSSE NTPEITEIQE LQTESSSNNG HVPGVASSSM 
400
RQNTVAHGGD RFMMVTDMTR NGNGGMSLTL GIQNSDARGD VPMSGGIDNY 
450
KNTISGTDLQ YLNSRNHQHQ IGSSQLLHDF VA
500