Locus |
Common name |
Short description |
AT2G18380 |
GATA20, HANL1 |
hanaba taranu like 1, GATA transcription factor 20 (.1) |
>AT2G18380.1 CDS map
>>Show genomic map

Uncut enzymes: AatII, Acc65I, AccI, AciI, AclI, AfeI, AflII, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvaI, AvrII, BaeI, BalI, BamHI, BanI, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BglI, BglII, BlpI, BmrI, BpmI, BsaBI, BsaHI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsiHKAI, BsiWI, BslI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, BspDI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrGI, BsrI, BssHII, BssKI, BssSI, BstAPI, BstBI, BstEII, BstF5I, BstNI, BstXI, BstYI, BstZ17I, Bsu36I, BtgI, BtrI, BtsI, ClaI, DraI, DraIII, DrdI, EagI, EarI, EciI, EcoNI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HhaI, HinP1I, HincII, HindIII, HpaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MlyI, MnlI, MscI, N.BstNBI, NaeI, , NarI, NciI, NcoI, NdeI, NgoMIV, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PspGI, PspOMI, PstI, PvuI, PvuII, RsrII, SacI, SacII, SalI, SapI, SbfI, ScaI, ScrFI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SmlI, SnaBI, SpeI, SphI, SspI, StuI, StyI, SwaI, TliI, TspRI, Tth111I, XbaI, XcmI, XhoI, XmaI, XmnI
Name |
Recognition sequence |
Cut positions |
AccII(FnuDII)
| CG|CG |
349 |
AccIII(BspMII)
| T|CCGGA |
564 |
AflIII
| A|CPuPyGT |
350 |
AgeI
| A|CCGGT |
558 |
AluI
| AG|CT |
284 |
ApoI
| Pu|AATTPy |
450 |
AvaII
| G|G[AT]CC |
321, 330 |
BanII
| GPuGCPy|C |
521 |
BfaI
| C|TAG |
282 |
BsaAI
| PyAC|GTPu |
583 |
BsaJI
| C|CNNGG |
44 |
BsaWI
| [AT]|CCGG[AT] |
412, 558, 564 |
Bsp1286I
| G[GAT]GC[CAT]|C |
521 |
BspEI
| T|CCGGA |
564 |
BsrFI
| Pu|CCGGPy |
558 |
BstUI
| CG|CG |
349 |
Cac8I
| GCN|NGC |
283, 384 |
Cfr10I
| [AG]|CCGG[TC] |
558 |
DdeI
| C|TNAG |
226, 334 |
DpnI
| GA-CH3|TC |
77, 406 |
DpnII
| |GATC |
77, 406 |
EaeI
| Py|GGCCPu |
392 |
EcoO109I
| PuG|GNCCPy |
331 |
EcoRI
| G|AATTC |
450 |
Fnu4HI
| GC|NGC |
286, 429 |
HaeIII
| GG|CC |
391 |
HinfI
| G|ANTC |
358, 364 |
HpaII
| C|CGG |
195, 411, 557, 563 |
Hpy188I
| TCN|GA |
45, 361, 527 |
Hpy99I
| CG[AT]CG| |
152, 388, 505, 514 |
HpyCH4III
| ACN|GT |
478 |
HpyCH4IV
| A|CGT |
582, 591 |
HpyCH4V
| TG|CA |
116 |
MboI
| |GATC |
77, 406 |
MluI
| A|CGCGT |
350 |
MseI
| T|TAA |
401 |
MslI
| CAPyNN|NNPuTG |
497 |
MspA1I
| C[AC]G|C[GT]G |
428 |
MspI
| C|CGG |
195, 411, 557, 563 |
MwoI
| GCNNNNN|NNGC |
271 |
NheI
| G|CTAGC |
283 |
NlaIII
| CATG| |
31 |
NlaIV
| GGN|NCC |
561 |
PpuMI
| PuG|G[AT]CCPy |
331 |
PshAI
| GACNN|NNGTC |
336 |
PsiI
| TTA|TAA |
84 |
RsaI
| GT|AC |
238, 454 |
Sau3AI
| |GATC |
77, 406 |
Sau96I
| G|GNCC |
321, 330 |
Taqƒ¿I
| T|CGA |
150 |
TfiI
| G|A[AT]TC |
358, 364 |
TseI
| G|C[AT]GC |
286 |
Tsp45I
| |GT[CG]AC |
594 |
Tsp509I
| |AATT |
23, 89, 179, 449, 620 |
Click here to view TAIR data
>AT2G18380.1 length:627
ATGATGGGAT ACCAAACAAA CTCTAATTTC TCCATGTTTT TTTCCTCGGA | 50 |
AAATGACGAC CAAAACCACC ACAACTACGA TCCTTATAAT AATTTCTCTT | 100 |
CATCAACTTC TGTTGATTGC ACTCTCTCAC TTGGAACACC CTCTACTCGT | 150 |
CTCGACGACC ACCATAGATT TTCTTCTGCT AATTCTAACA ACATCTCCGG | 200 |
CGACTTTTAT ATTCACGGAG GAAACGCTAA GACTTCTTCG TACAAGAAGG | 250 |
GTGGTGTTGC TCATAGCCTA CCTCGCCGTT GTGCTAGCTG CGACACCACT | 300 |
TCAACTCCTC TATGGAGAAA CGGACCAAAA GGACCTAAGT CGTTATGTAA | 350 |
CGCGTGTGGA ATCCGATTCA AGAAAGAGGA GAGGCGTGCG ACGGCCAGAA | 400 |
ACTTAACGAT CTCCGGTGGA GGTTCATCAG CGGCAGAAGT CCCAGTAGAG | 450 |
AATTCGTACA ACGGAGGTGG AAACTATTAC AGTCATCATC ATCATCACTA | 500 |
TGCCTCGTCG TCGCCGTCGT GGGCTCATCA GAACACACAA AGAGTTCCAT | 550 |
ATTTCTCACC GGTTCCGGAG ATGGAATATC CCTACGTGGA TAACGTCACG | 600 |
GCTTCTTCTT TTATGTCTTG GAATTGA | 650 |
>AT2G18380.1 longest ORF length:208
MMGYQTNSNF SMFFSSENDD QNHHNYDPYN NFSSSTSVDC TLSLGTPSTR | 50 |
LDDHHRFSSA NSNNISGDFY IHGGNAKTSS YKKGGVAHSL PRRCASCDTT | 100 |
STPLWRNGPK GPKSLCNACG IRFKKEERRA TARNLTISGG GSSAAEVPVE | 150 |
NSYNGGGNYY SHHHHHYASS SPSWAHQNTQ RVPYFSPVPE MEYPYVDNVT | 200 |
ASSFMSWN | 250 |
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