fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT2G18380 GATA20, HANL1 hanaba taranu like 1, GATA transcription factor 20 (.1)

>AT2G18380.1 CDS map

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Uncut enzymes: AatII, Acc65I, AccI, AciI, AclI, AfeI, AflII, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvaI, AvrII, BaeI, BalI, BamHI, BanI, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BglI, BglII, BlpI, BmrI, BpmI, BsaBI, BsaHI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsiHKAI, BsiWI, BslI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, BspDI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrGI, BsrI, BssHII, BssKI, BssSI, BstAPI, BstBI, BstEII, BstF5I, BstNI, BstXI, BstYI, BstZ17I, Bsu36I, BtgI, BtrI, BtsI, ClaI, DraI, DraIII, DrdI, EagI, EarI, EciI, EcoNI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HhaI, HinP1I, HincII, HindIII, HpaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MlyI, MnlI, MscI, N.BstNBI, NaeI, , NarI, NciI, NcoI, NdeI, NgoMIV, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PspGI, PspOMI, PstI, PvuI, PvuII, RsrII, SacI, SacII, SalI, SapI, SbfI, ScaI, ScrFI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SmlI, SnaBI, SpeI, SphI, SspI, StuI, StyI, SwaI, TliI, TspRI, Tth111I, XbaI, XcmI, XhoI, XmaI, XmnI
Name Recognition sequence Cut positions
AccII(FnuDII) CG|CG 349
AccIII(BspMII) T|CCGGA 564
AflIII A|CPuPyGT 350
AgeI A|CCGGT 558
AluI AG|CT 284
ApoI Pu|AATTPy 450
AvaII G|G[AT]CC 321, 330
BanII GPuGCPy|C 521
BfaI C|TAG 282
BsaAI PyAC|GTPu 583
BsaJI C|CNNGG 44
BsaWI [AT]|CCGG[AT] 412, 558, 564
Bsp1286I G[GAT]GC[CAT]|C 521
BspEI T|CCGGA 564
BsrFI Pu|CCGGPy 558
BstUI CG|CG 349
Cac8I GCN|NGC 283, 384
Cfr10I [AG]|CCGG[TC] 558
DdeI C|TNAG 226, 334
DpnI GA-CH3|TC 77, 406
DpnII |GATC 77, 406
EaeI Py|GGCCPu 392
EcoO109I PuG|GNCCPy 331
EcoRI G|AATTC 450
Fnu4HI GC|NGC 286, 429
HaeIII GG|CC 391
HinfI G|ANTC 358, 364
HpaII C|CGG 195, 411, 557, 563
Hpy188I TCN|GA 45, 361, 527
Hpy99I CG[AT]CG| 152, 388, 505, 514
HpyCH4III ACN|GT 478
HpyCH4IV A|CGT 582, 591
HpyCH4V TG|CA 116
MboI |GATC 77, 406
MluI A|CGCGT 350
MseI T|TAA 401
MslI CAPyNN|NNPuTG 497
MspA1I C[AC]G|C[GT]G 428
MspI C|CGG 195, 411, 557, 563
MwoI GCNNNNN|NNGC 271
NheI G|CTAGC 283
NlaIII CATG| 31
NlaIV GGN|NCC 561
PpuMI PuG|G[AT]CCPy 331
PshAI GACNN|NNGTC 336
PsiI TTA|TAA 84
RsaI GT|AC 238, 454
Sau3AI |GATC 77, 406
Sau96I G|GNCC 321, 330
Taqƒ¿I T|CGA 150
TfiI G|A[AT]TC 358, 364
TseI G|C[AT]GC 286
Tsp45I |GT[CG]AC 594
Tsp509I |AATT 23, 89, 179, 449, 620


Click here to view TAIR data

>AT2G18380.1 length:627
ATGATGGGAT ACCAAACAAA CTCTAATTTC TCCATGTTTT TTTCCTCGGA 
50
AAATGACGAC CAAAACCACC ACAACTACGA TCCTTATAAT AATTTCTCTT 
100
CATCAACTTC TGTTGATTGC ACTCTCTCAC TTGGAACACC CTCTACTCGT 
150
CTCGACGACC ACCATAGATT TTCTTCTGCT AATTCTAACA ACATCTCCGG 
200
CGACTTTTAT ATTCACGGAG GAAACGCTAA GACTTCTTCG TACAAGAAGG 
250
GTGGTGTTGC TCATAGCCTA CCTCGCCGTT GTGCTAGCTG CGACACCACT 
300
TCAACTCCTC TATGGAGAAA CGGACCAAAA GGACCTAAGT CGTTATGTAA 
350
CGCGTGTGGA ATCCGATTCA AGAAAGAGGA GAGGCGTGCG ACGGCCAGAA 
400
ACTTAACGAT CTCCGGTGGA GGTTCATCAG CGGCAGAAGT CCCAGTAGAG 
450
AATTCGTACA ACGGAGGTGG AAACTATTAC AGTCATCATC ATCATCACTA 
500
TGCCTCGTCG TCGCCGTCGT GGGCTCATCA GAACACACAA AGAGTTCCAT 
550
ATTTCTCACC GGTTCCGGAG ATGGAATATC CCTACGTGGA TAACGTCACG 
600
GCTTCTTCTT TTATGTCTTG GAATTGA
650

>AT2G18380.1 longest ORF length:208
MMGYQTNSNF SMFFSSENDD QNHHNYDPYN NFSSSTSVDC TLSLGTPSTR 
50
LDDHHRFSSA NSNNISGDFY IHGGNAKTSS YKKGGVAHSL PRRCASCDTT 
100
STPLWRNGPK GPKSLCNACG IRFKKEERRA TARNLTISGG GSSAAEVPVE 
150
NSYNGGGNYY SHHHHHYASS SPSWAHQNTQ RVPYFSPVPE MEYPYVDNVT 
200
ASSFMSWN
250