fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT2G20110 Tesmin/TSO1-like CXC domain-containing protein (.1.2)

>AT2G20110.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRV, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, XhoI
Name Recognition sequence Cut positions
EcoRI G|AATTC 300
HindIII A|AGCTT 131
StyI C|C[AT][AT]GG 310, 879
XbaI T|CTAGA 1455


Click here to view TAIR data

>AT2G20110.1 length:1716
ATGGGAGAAG GTGAAGAAGG AGACAAATTC CCGCCAAAAA CGGATGAGGT 
50
TACACAAGAG TCTATGAAGT CGGCGAGGCA ACTCGATTTT ACTGGTGGTT 
100
CTTCCGATGT TGAGCATTCA CACTCTAATC AAGCTTCTTC GATGGCTGCT 
150
GCATCAATCC CTTCACCGAT TGTGACGGTT ACGCGGCCAA TAATTACCAG 
200
TCAGGCACCA CCGACGGTGG CGACTCCGAT TCCACCGCCG CCACAATCTC 
250
AGGGCATCAT CCTTCACGTC CCAATTAGAC ATCCGAGGCC CGAATCTCCG 
300
AATTCGATGC CAAGGCCTGC TGGGGAAACT AGAGATGGAA CCCCTCAGAA 
350
GAAGAAACAG TGTAACTGTA AACACTCACG GTGCTTGAAG CTGTATTGTG 
400
AATGTTTTGC ATCTGGCACT TACTGTGATG GTTGCAACTG TGTAAATTGT 
450
TTCAACAACG TTGAAAATGA ACCTGCGAGA CGACAAGCGG TTGAATCAAC 
500
TCTGGAACGG AATCCGAATG CGTTCAGGCC AAAGATTGCT GCTAGTCCAC 
550
ATGGTGGACG AGATAACAGG GAGGAGGTTG GTGACGTTGT GATGTTAGCG 
600
AGACACAACA AAGGCTGTCA CTGCAAGAAA TCCGGATGTC TTAAGAAGTA 
650
TTGTGAGTGC TTTCAAGCAA ACATTCTTTG TTCTGAGAAC TGCAAATGCT 
700
TGGATTGCAA AAACTTTGAA GGGAGTGAAG TTAGACAATC TCTTTTTCAC 
750
GGTGAACATT CCCACAACTT GGCTTATCTT CAACACGCAA ATGCTGCCAT 
800
AACCGGAGCT ATTGGTTCCT CTGGCTTTGC ATCTGCTCCA CCTCCTAAGA 
850
GAAGGAAAGG TCAGGAGATT TTCTTCAACC AAGGAACCAA AGATTCATCC 
900
ACTCATAGGC TTGGCCAGGC AAATAACGGA AGAACCACAT CTTCGCAAAC 
950
TGGTTCTCGT GCTGGAGGCA ATGCGTCGTT AGGCCCATCC AAAGTTGTAT 
1000
ATAAGTCTCT TTTGGCAAAC ATAATTAAAC CAATGGATGT GAAAGCACTA 
1050
TGTTCTGTTC TGGTTGCTGT AGCTGGGGAA GCTGCAAAGA CATTAACAGA 
1100
AAAACGGTTA GCAAATCAGA AAGAAACTTC CGTAGCTTCT TCTGTGCAAG 
1150
ATCAAGGACA CGTCAATAAT AAAGCTGAGA AATCTGGTTT AGAGGATTCA 
1200
AATGCAGATG GCTCCAAAGG GAGGTCACTA TCTCCAGAAA CTTTGGCATT 
1250
GATGTGTGAC GAACGGGACA CAATGTTAAT GGTTGCAGCT TCACCTAATT 
1300
GTTCGGTGGA GCCTACGTCA CAGCTACCAA ACGGGCAAGA CCAGGTTTAT 
1350
GCAGAACAAG AAAAAGTAGT ATTAACCAAG TTCCGTGACT GCCTTAACCG 
1400
AATAATCTCC TGTGGAGAAG TAAAAGAATC AAATTGTTCT ATGTCAAGAA 
1450
TGGATCTAGA TACACCTGTA CAAACGACTG TCAGAATCGA CCCAGTGGTT 
1500
CAACAAGCTC CAGTTGCAAA TGGAGTTTCA CAAACCGCAA AGCAACCTTC 
1550
CCAGCTAAAC ACAACAACAC CAAACACATC CTCACAAACT GCAAATGGAG 
1600
TTTCACAAAC GGCAAAGCAA CCTTCCCAGC TAACCACAAC AACAACAACA 
1650
CCAAACACAT CCTCACAAAC TCATCTTCAT AAAACTCCAG CTTTGTCTGA 
1700
GAAGAAAGAC CTCTAA
1750

>AT2G20110.1 longest ORF length:571
MGEGEEGDKF PPKTDEVTQE SMKSARQLDF TGGSSDVEHS HSNQASSMAA 
50
ASIPSPIVTV TRPIITSQAP PTVATPIPPP PQSQGIILHV PIRHPRPESP 
100
NSMPRPAGET RDGTPQKKKQ CNCKHSRCLK LYCECFASGT YCDGCNCVNC 
150
FNNVENEPAR RQAVESTLER NPNAFRPKIA ASPHGGRDNR EEVGDVVMLA 
200
RHNKGCHCKK SGCLKKYCEC FQANILCSEN CKCLDCKNFE GSEVRQSLFH 
250
GEHSHNLAYL QHANAAITGA IGSSGFASAP PPKRRKGQEI FFNQGTKDSS 
300
THRLGQANNG RTTSSQTGSR AGGNASLGPS KVVYKSLLAN IIKPMDVKAL 
350
CSVLVAVAGE AAKTLTEKRL ANQKETSVAS SVQDQGHVNN KAEKSGLEDS 
400
NADGSKGRSL SPETLALMCD ERDTMLMVAA SPNCSVEPTS QLPNGQDQVY 
450
AEQEKVVLTK FRDCLNRIIS CGEVKESNCS MSRMDLDTPV QTTVRIDPVV 
500
QQAPVANGVS QTAKQPSQLN TTTPNTSSQT ANGVSQTAKQ PSQLTTTTTT 
550
PNTSSQTHLH KTPALSEKKD L
600