fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT2G20180 PIF1, PIL5, bHLH015 PHY-INTERACTING FACTOR 1, phytochrome interacting factor 3-like 5 (.1.2.3)

>AT2G20180.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, EcoRI, EcoRV, HpaI, KpnI, NcoI, NheI, NotI, PacI, PstI, SacI, SalI, SmaI, SpeI, StyI, XbaI
Name Recognition sequence Cut positions
BamHI G|GATCC 3, 1086
BglII A|GATCT 105, 631
HindIII A|AGCTT 701, 743
NdeI CA|TATG 865
PvuII CAG|CTG 1073
XhoI C|TCGAG 231


Click here to view TAIR data

>AT2G20180.1 length:1224
ATGGATCCTC AGCAGCAACC TTCTTCAGAT CAGAATCTTT TTATTCAAGA 
50
AGATGAAATG ACTTCTTGGC TTCATTATCC TCTCCGTGAC GATGATTTCT 
100
GCTCAGATCT TCTCTTCTCC GCCGCACCTA CTGCGACGGC TACCGCGACG 
150
GTGAGTCAAG TCACCGCCGC GAGACCGCCA GTATCTTCGA CGAATGAGTC 
200
GAGGCCGCCG GTGAGGAACT TCATGAATTT CTCGAGGCTG AGAGGGGATT 
250
TTAATAACGG TAGAGGTGGT GAATCTGGAC CGTTGCTTTC GAAGGCGGTT 
300
GTGAGAGAAT CTACGCAGGT AAGTCCTAGC GCAACACCGT CGGCGGCGGC 
350
GAGTGAATCC GGTTTAACAC GGCGGACGGA TGGTACTGAC AGTTCCGCCG 
400
TAGCTGGAGG CGGCGCGTAT AATCGGAAGG GAAAAGCAGT GGCTATGACG 
450
GCGCCGGCGA TCGAGATAAC CGGTACATCG TCATCTGTAG TGTCAAAGAG 
500
CGAAATCGAA CCGGAGAAGA CGAACGTCGA TGATAGGAAA CGAAAAGAGA 
550
GAGAAGCCAC CACTACTGAT GAAACTGAAT CCCGTAGCGA GGAAACAAAA 
600
CAAGCACGTG TATCAACAAC ATCTACCAAG AGATCTCGTG CTGCTGAAGT 
650
TCATAATCTC TCTGAAAGAA AACGGAGAGA TAGGATCAAT GAGAGAATGA 
700
AAGCTTTGCA AGAACTTATA CCTCGCTGCA ACAAGTCAGA TAAAGCTTCG 
750
ATGCTAGATG AAGCTATTGA GTACATGAAA TCTCTTCAGC TTCAAATACA 
800
GATGATGTCA ATGGGATGTG GAATGATGCC AATGATGTAT CCGGGCATGC 
850
AACAGTACAT GCCTCATATG GCGATGGGTA TGGGTATGAA CCAGCCTATT 
900
CCTCCTCCTT CCTTCATGCC ATTCCCCAAC ATGTTAGCCG CTCAAAGACC 
950
TTTGCCTACA CAAACTCACA TGGCCGGGTC AGGACCGCAA TACCCTGTTC 
1000
ATGCTTCTGA CCCGTCAAGA GTCTTTGTAC CGAACCAGCA GTATGATCCA 
1050
ACCTCGGGCC AGCCTCAGTA TCCAGCTGGT TACACGGATC CATATCAGCA 
1100
GTTCCGCGGT CTCCACCCGA CCCAACCACC TCAGTTTCAG AATCAAGCAA 
1150
CATCGTACCC AAGTTCGAGC AGGGTGAGTA GTAGTAAGGA ATCTGAGGAT 
1200
CACGGAAACC ACACAACAGG TTAA
1250

>AT2G20180.1 longest ORF length:407
MDPQQQPSSD QNLFIQEDEM TSWLHYPLRD DDFCSDLLFS AAPTATATAT 
50
VSQVTAARPP VSSTNESRPP VRNFMNFSRL RGDFNNGRGG ESGPLLSKAV 
100
VRESTQVSPS ATPSAAASES GLTRRTDGTD SSAVAGGGAY NRKGKAVAMT 
150
APAIEITGTS SSVVSKSEIE PEKTNVDDRK RKEREATTTD ETESRSEETK 
200
QARVSTTSTK RSRAAEVHNL SERKRRDRIN ERMKALQELI PRCNKSDKAS 
250
MLDEAIEYMK SLQLQIQMMS MGCGMMPMMY PGMQQYMPHM AMGMGMNQPI 
300
PPPSFMPFPN MLAAQRPLPT QTHMAGSGPQ YPVHASDPSR VFVPNQQYDP 
350
TSGQPQYPAG YTDPYQQFRG LHPTQPPQFQ NQATSYPSSS RVSSSKESED 
400
HGNHTTG
450