fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT2G20180 PIF1, PIL5, bHLH015 PHY-INTERACTING FACTOR 1, phytochrome interacting factor 3-like 5 (.1.2.3)

>AT2G20180.2 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, EcoRI, EcoRV, HpaI, KpnI, NcoI, NheI, NotI, PacI, PstI, SacI, SalI, SmaI, SpeI, StyI, XbaI
Name Recognition sequence Cut positions
BamHI G|GATCC 216, 1299
BglII A|GATCT 318, 844
HindIII A|AGCTT 199, 914, 956
NdeI CA|TATG 1078
PvuII CAG|CTG 1286
XhoI C|TCGAG 444


Click here to view TAIR data

>AT2G20180.2 length:1437
ATGCATCATT TTGTCCCTGA CTTCGATACC GATGATGATT ATGTCAACAA 
50
CCATAATTCT TCTTTGAATC ATCTTCCTAG AAAATCCATT ACTACTATGG 
100
GTGAAGATGA TGATCTTATG GAGCTTTTAT GGCAGAACGG TCAAGTTGTT 
150
GTTCAAAACC AGAGACTTCA CACCAAGAAA CCTTCTTCTT CTCCACCGAA 
200
GCTTCTTCCT TCTATGGATC CTCAGCAGCA ACCTTCTTCA GATCAGAATC 
250
TTTTTATTCA AGAAGATGAA ATGACTTCTT GGCTTCATTA TCCTCTCCGT 
300
GACGATGATT TCTGCTCAGA TCTTCTCTTC TCCGCCGCAC CTACTGCGAC 
350
GGCTACCGCG ACGGTGAGTC AAGTCACCGC CGCGAGACCG CCAGTATCTT 
400
CGACGAATGA GTCGAGGCCG CCGGTGAGGA ACTTCATGAA TTTCTCGAGG 
450
CTGAGAGGGG ATTTTAATAA CGGTAGAGGT GGTGAATCTG GACCGTTGCT 
500
TTCGAAGGCG GTTGTGAGAG AATCTACGCA GGTAAGTCCT AGCGCAACAC 
550
CGTCGGCGGC GGCGAGTGAA TCCGGTTTAA CACGGCGGAC GGATGGTACT 
600
GACAGTTCCG CCGTAGCTGG AGGCGGCGCG TATAATCGGA AGGGAAAAGC 
650
AGTGGCTATG ACGGCGCCGG CGATCGAGAT AACCGGTACA TCGTCATCTG 
700
TAGTGTCAAA GAGCGAAATC GAACCGGAGA AGACGAACGT CGATGATAGG 
750
AAACGAAAAG AGAGAGAAGC CACCACTACT GATGAAACTG AATCCCGTAG 
800
CGAGGAAACA AAACAAGCAC GTGTATCAAC AACATCTACC AAGAGATCTC 
850
GTGCTGCTGA AGTTCATAAT CTCTCTGAAA GAAAACGGAG AGATAGGATC 
900
AATGAGAGAA TGAAAGCTTT GCAAGAACTT ATACCTCGCT GCAACAAGTC 
950
AGATAAAGCT TCGATGCTAG ATGAAGCTAT TGAGTACATG AAATCTCTTC 
1000
AGCTTCAAAT ACAGATGATG TCAATGGGAT GTGGAATGAT GCCAATGATG 
1050
TATCCGGGCA TGCAACAGTA CATGCCTCAT ATGGCGATGG GTATGGGTAT 
1100
GAACCAGCCT ATTCCTCCTC CTTCCTTCAT GCCATTCCCC AACATGTTAG 
1150
CCGCTCAAAG ACCTTTGCCT ACACAAACTC ACATGGCCGG GTCAGGACCG 
1200
CAATACCCTG TTCATGCTTC TGACCCGTCA AGAGTCTTTG TACCGAACCA 
1250
GCAGTATGAT CCAACCTCGG GCCAGCCTCA GTATCCAGCT GGTTACACGG 
1300
ATCCATATCA GCAGTTCCGC GGTCTCCACC CGACCCAACC ACCTCAGTTT 
1350
CAGAATCAAG CAACATCGTA CCCAAGTTCG AGCAGGGTGA GTAGTAGTAA 
1400
GGAATCTGAG GATCACGGAA ACCACACAAC AGGTTAA
1450

>AT2G20180.2 longest ORF length:478
MHHFVPDFDT DDDYVNNHNS SLNHLPRKSI TTMGEDDDLM ELLWQNGQVV 
50
VQNQRLHTKK PSSSPPKLLP SMDPQQQPSS DQNLFIQEDE MTSWLHYPLR 
100
DDDFCSDLLF SAAPTATATA TVSQVTAARP PVSSTNESRP PVRNFMNFSR 
150
LRGDFNNGRG GESGPLLSKA VVRESTQVSP SATPSAAASE SGLTRRTDGT 
200
DSSAVAGGGA YNRKGKAVAM TAPAIEITGT SSSVVSKSEI EPEKTNVDDR 
250
KRKEREATTT DETESRSEET KQARVSTTST KRSRAAEVHN LSERKRRDRI 
300
NERMKALQEL IPRCNKSDKA SMLDEAIEYM KSLQLQIQMM SMGCGMMPMM 
350
YPGMQQYMPH MAMGMGMNQP IPPPSFMPFP NMLAAQRPLP TQTHMAGSGP 
400
QYPVHASDPS RVFVPNQQYD PTSGQPQYPA GYTDPYQQFR GLHPTQPPQF 
450
QNQATSYPSS SRVSSSKESE DHGNHTTG
500