fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT2G20400 myb-like HTH transcriptional regulator family protein (.1)

>AT2G20400.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, HindIII, KpnI, NcoI, NheI, NotI, PacI, PvuII, SacI, SalI, SmaI, SpeI, StyI, XbaI, XhoI
Name Recognition sequence Cut positions
EcoRI G|AATTC 968
EcoRV GAT|ATC 949
HpaI GTT|AAC 742
NdeI CA|TATG 793
PstI CTGCA|G 589


Click here to view TAIR data

>AT2G20400.1 length:1194
ATGATCCCGA ATGATGATGA TGATGCAAAT TCTATGAAGA ATTATCCGTT 
50
AAATGATGAT GATGCAAATT CTATGAAGAA TTATCCGTTA AATGATGATG 
100
ATGCAAATTC TATGGAGAAT TATCCGTTAA GGTCAATTCC GACGGAGCTT 
150
TCACACACTT GTTCATTGAT ACCACCTTCT TTACCAAACC CTTCAGAAGC 
200
AGCAGCAGAC ATGTCCTTCA ATTCAGAACT CAATCAAATC ATGGCAAGGC 
250
CTTGTGATAT GCTCCCTGCC AATGGTGGAG CTGTTGGTCA TAACCCTTTT 
300
TTGGAACCAG GATTCAACTG CCCCGAGACA ACAGATTGGA TTCCCTCTCC 
350
ACTCCCCCAT ATTTATTTTC CTTCGGGTTC TCCCAATCTA ATAATGGAGG 
400
ATGGTGTCAT TGATGAGATT CACAAACAAA GTGACTTGCC ACTTTGGTAT 
450
GACGACTTGA TTACCACTGA TGAAGATCCA CTCATGTCTA GTATCTTGGG 
500
CGATCTTCTC CTTGACACTA ATTTCAACTC AGCTTCAAAG GTCCAGCAAC 
550
CAAGTATGCA ATCGCAGATT CAACAACCCC AAGCTGTTCT GCAGCAGCCT 
600
TCTTCTTGTG TGGAATTGCG CCCACTTGAT AGGACAGTAT CCTCAAACAG 
650
CAACAACAAT AGCAACAGTA ATAATGCAGC AGCAGCAGCT AAGGGACGTA 
700
TGCGTTGGAC GCCTGAACTT CATGAGGTTT TTGTTGACGC TGTTAACCAG 
750
CTCGGTGGCA GTAATGAAGC AACTCCTAAA GGTGTCCTGA AGCATATGAA 
800
AGTCGAAGGT TTGACTATTT TTCATGTCAA AAGTCATTTG CAGAAATATA 
850
GAACAGCTAA ATATATACCA GTACCATCAG AAGGTTCGCC GGAGGCAAGG 
900
TTGACACCGC TTGAGCAAAT TACATCTGAT GATACGAAAC GTGGGATAGA 
950
TATCACTGAG ACTCTGCGAA TTCAGATGGA ACATCAGAAG AAACTGCATG 
1000
AGCAGCTTGA GAGTCTAAGA ACAATGCAAC TTCGGATAGA AGAGCAAGGA 
1050
AAGGCGCTGT TGATGATGAT TGAGAAGCAA AATATGGGTT TCGGCGGACC 
1100
AGAACAAGGA GAGAAAACAA GTGCGAAAAC GCCTGAAAAT GGTTCAGAGG 
1150
AGTCGGAATC CCCGCGGCCA AAGCGTCCGA GAAATGAAGA ATGA
1200

>AT2G20400.1 longest ORF length:397
MIPNDDDDAN SMKNYPLNDD DANSMKNYPL NDDDANSMEN YPLRSIPTEL 
50
SHTCSLIPPS LPNPSEAAAD MSFNSELNQI MARPCDMLPA NGGAVGHNPF 
100
LEPGFNCPET TDWIPSPLPH IYFPSGSPNL IMEDGVIDEI HKQSDLPLWY 
150
DDLITTDEDP LMSSILGDLL LDTNFNSASK VQQPSMQSQI QQPQAVLQQP 
200
SSCVELRPLD RTVSSNSNNN SNSNNAAAAA KGRMRWTPEL HEVFVDAVNQ 
250
LGGSNEATPK GVLKHMKVEG LTIFHVKSHL QKYRTAKYIP VPSEGSPEAR 
300
LTPLEQITSD DTKRGIDITE TLRIQMEHQK KLHEQLESLR TMQLRIEEQG 
350
KALLMMIEKQ NMGFGGPEQG EKTSAKTPEN GSEESESPRP KRPRNEE
400