Locus |
Common name |
Short description |
AT2G22430 |
ATHB6 |
homeobox protein 6 (.1) |
>AT2G22430.1 CDS map
>>Show genomic map
![](/fiore/public_db/temp/temp2194432314519951.png)
Uncut enzymes: AatII, Acc65I, AccI, AccIII(BspMII), AclI, AflII, AgeI, AhdI, AlwI, AlwNI, ApaI, ApaLI, AscI, AseI, AvaI, AvaII, AvrII, BaeI, BalI, BamHI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BfaI, BglI, BlpI, BmrI, BpmI, BsaBI, BsaHI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsiWI, BslI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, BspDI, BspEI, BspMI, BsrBI, BsrDI, BsrFI, BsrGI, BssHII, BssSI, BstAPI, BstBI, BstEII, BstF5I, BstXI, BstZ17I, Bsu36I, BtgI, BtrI, BtsI, Cac8I, Cfr10I, ClaI, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRV, FauI, FokI, FseI, FspI, HaeIII, HgaI, HincII, HpaI, HphI, HpyCH4V, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, NaeI, , NarI, NciI, NcoI, NdeI, NgoMIV, NheI, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PpuMI, PshAI, PsiI, PspOMI, PstI, PvuI, RsrII, SacI, SacII, SalI, SapI, Sau96I, SbfI, ScaI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, StuI, StyI, SwaI, TliI, Tth111I, XbaI, XcmI, XhoI, XmaI, XmnI
Name |
Recognition sequence |
Cut positions |
AccII(FnuDII)
| CG|CG |
511 |
AciI
| C|CGC |
418, 693, 890 |
AfeI
| AGC|GCT |
730 |
AflIII
| A|CPuPyGT |
165 |
AluI
| AG|CT |
142, 214, 246, 274, 351, 468, 700, 752, 862 |
Aor51HI(Eco47III)
| AGC|GCT |
730 |
ApoI
| Pu|AATTPy |
228, 871 |
BanI
| G|GPyPuCC |
585 |
BclI
| T|GATCA |
921 |
BglII
| A|GATCT |
648 |
BsaAI
| PyAC|GTPu |
166, 653 |
BsaJI
| C|CNNGG |
82 |
BsaWI
| [AT]|CCGG[AT] |
635, 777 |
BsiHKAI
| G[AT]GC[AT]|C |
332 |
Bsp1286I
| G[GAT]GC[CAT]|C |
332 |
BspHI
| T|CATGA |
837 |
BspT107I(HgiCI)
| G|G[TC][AG]CC |
585 |
BsrI
| ACTGGN| |
905 |
BssKI
| |CCNGG |
789 |
BstNI
| CC|[AT]GG |
789 |
BstUI
| CG|CG |
511 |
BstYI
| Pu|GATCPy |
648, 706 |
DdeI
| C|TNAG |
256, 849 |
DpnI
| GA-CH3|TC |
647, 656, 705, 833, 920 |
DpnII
| |GATC |
647, 656, 705, 833, 920 |
EcoRI
| G|AATTC |
871 |
Fnu4HI
| GC|NGC |
513, 675, 693, 699, 751, 771 |
HaeII
| PuGCGC|Py |
730 |
HhaI
| GCG|C |
729 |
HinP1I
| G|CGC |
729 |
HindIII
| A|AGCTT |
215, 247, 469, 863 |
HinfI
| G|ANTC |
24, 77, 390, 411, 432, 723 |
HpaII
| C|CGG |
566, 634, 776 |
Hpy188I
| TCN|GA |
21, 80, 177, 618, 711, 848, 879 |
Hpy99I
| CG[AT]CG| |
327, 589 |
HpyCH4III
| ACN|GT |
91, 325, 367, 587, 602, 715, 765, 783, 915 |
HpyCH4IV
| A|CGT |
165, 652 |
MboI
| |GATC |
647, 656, 705, 833, 920 |
MseI
| T|TAA |
11, 194, 201, 210, 267, 375, 471, 627, 668 |
MslI
| CAPyNN|NNPuTG |
620 |
MspA1I
| C[AC]G|C[GT]G |
701 |
MspI
| C|CGG |
566, 634, 776 |
MwoI
| GCNNNNN|NNGC |
699, 727 |
N.BstNBI
| GAGTCNNNN|N |
82 |
NlaIII
| CATG| |
836 |
NlaIV
| GGN|NCC |
585, 774, 786 |
PmlI
| CAC|GTG |
166 |
PspGI
| |CC[AT]GG |
789 |
PvuII
| CAG|CTG |
701 |
RsaI
| GT|AC |
385, 907 |
Sau3AI
| |GATC |
647, 656, 705, 833, 920 |
ScrFI
| CC|NGG |
789 |
SfcI
| C|TPuPyAG |
146 |
SmlI
| C|TPyPuAG |
250, 278, 355 |
Taqƒ¿I
| T|CGA |
110 |
TfiI
| G|A[AT]TC |
24, 390, 411, 432, 723 |
TseI
| G|C[AT]GC |
699, 751 |
Tsp45I
| |GT[CG]AC |
424, 519, 762, 780 |
Tsp509I
| |AATT |
227, 629, 797, 870, 929 |
TspRI
| NNCA[CG]TGNN| |
30, 766, 905 |
Click here to view TAIR data
>AT2G22430.1 length:936
ATGATGAAGA GATTAAGTAG TTCAGATTCA GTGGGTGGTC TCATCTCTTT | 50 |
ATGTCCTACA ACTTCCACAG ATGAGCAGAG TCCGAGGAGA TACGGTGGGA | 100 |
GAGAGTTTCA GTCGATGCTT GAAGGATACG AGGAAGAAGA AGAAGCTATA | 150 |
GTAGAAGAAA GAGGACACGT GGGCTTGTCG GAGAAGAAGA GAAGGTTAAG | 200 |
CATTAACCAA GTTAAAGCTT TGGAGAAGAA TTTTGAGTTA GAGAATAAGC | 250 |
TTGAGCCTGA GAGGAAAGTT AAGTTAGCTC AAGAACTTGG TCTTCAACCT | 300 |
CGTCAAGTTG CTGTTTGGTT TCAAAACCGT CGTGCTCGGT GGAAGACAAA | 350 |
ACAGCTTGAG AAAGATTACG GTGTTCTTAA AACCCAGTAC GATTCTCTCC | 400 |
GTCATAACTT TGATTCCCTC CGCCGTGACA ATGAATCTCT CCTTCAAGAG | 450 |
ATTAGTAAAC TGAAAACGAA GCTTAATGGA GGAGGAGGAG AAGAAGAAGA | 500 |
AGAAGAGAAC AACGCGGCGG TGACAACGGA GAGTGATATT TCGGTCAAGG | 550 |
AGGAAGAAGT TTCGTTGCCG GAGAAGATTA CAGAGGCACC GTCGTCTCCT | 600 |
CCACAGTTTC TTGAACATTC TGATGGTCTT AATTACCGGA GTTTCACAGA | 650 |
TCTACGTGAT CTTCTTCCAT TAAAGGCGGC GGCTTCTTCA TTCGCCGCCG | 700 |
CAGCTGGATC TTCAGACAGT AGCGATTCAA GCGCTCTGCT GAATGAAGAA | 750 |
AGCAGCTCTA ATGTCACTGT GGCGGCTCCG GTGACGGTTC CAGGAGGTAA | 800 |
TTTCTTCCAG TTTGTGAAAA TGGAGCAGAC GGAGGATCAT GAGGACTTTC | 850 |
TGAGTGGAGA AGAAGCTTGT GAATTCTTTT CCGATGAACA ACCGCCGTCT | 900 |
CTACACTGGT ACTCCACCGT TGATCATTGG AATTGA | 950 |
>AT2G22430.1 longest ORF length:311
MMKRLSSSDS VGGLISLCPT TSTDEQSPRR YGGREFQSML EGYEEEEEAI | 50 |
VEERGHVGLS EKKRRLSINQ VKALEKNFEL ENKLEPERKV KLAQELGLQP | 100 |
RQVAVWFQNR RARWKTKQLE KDYGVLKTQY DSLRHNFDSL RRDNESLLQE | 150 |
ISKLKTKLNG GGGEEEEEEN NAAVTTESDI SVKEEEVSLP EKITEAPSSP | 200 |
PQFLEHSDGL NYRSFTDLRD LLPLKAAASS FAAAAGSSDS SDSSALLNEE | 250 |
SSSNVTVAAP VTVPGGNFFQ FVKMEQTEDH EDFLSGEEAC EFFSDEQPPS | 300 |
LHWYSTVDHW N | 350 |
|