fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT2G22430 ATHB6 homeobox protein 6 (.1)

>AT2G22430.1 CDS map

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Uncut enzymes: AatII, Acc65I, AccI, AccIII(BspMII), AclI, AflII, AgeI, AhdI, AlwI, AlwNI, ApaI, ApaLI, AscI, AseI, AvaI, AvaII, AvrII, BaeI, BalI, BamHI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BfaI, BglI, BlpI, BmrI, BpmI, BsaBI, BsaHI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsiWI, BslI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, BspDI, BspEI, BspMI, BsrBI, BsrDI, BsrFI, BsrGI, BssHII, BssSI, BstAPI, BstBI, BstEII, BstF5I, BstXI, BstZ17I, Bsu36I, BtgI, BtrI, BtsI, Cac8I, Cfr10I, ClaI, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRV, FauI, FokI, FseI, FspI, HaeIII, HgaI, HincII, HpaI, HphI, HpyCH4V, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, NaeI, , NarI, NciI, NcoI, NdeI, NgoMIV, NheI, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PpuMI, PshAI, PsiI, PspOMI, PstI, PvuI, RsrII, SacI, SacII, SalI, SapI, Sau96I, SbfI, ScaI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, StuI, StyI, SwaI, TliI, Tth111I, XbaI, XcmI, XhoI, XmaI, XmnI
Name Recognition sequence Cut positions
AccII(FnuDII) CG|CG 511
AciI C|CGC 418, 693, 890
AfeI AGC|GCT 730
AflIII A|CPuPyGT 165
AluI AG|CT 142, 214, 246, 274, 351, 468, 700, 752, 862
Aor51HI(Eco47III) AGC|GCT 730
ApoI Pu|AATTPy 228, 871
BanI G|GPyPuCC 585
BclI T|GATCA 921
BglII A|GATCT 648
BsaAI PyAC|GTPu 166, 653
BsaJI C|CNNGG 82
BsaWI [AT]|CCGG[AT] 635, 777
BsiHKAI G[AT]GC[AT]|C 332
Bsp1286I G[GAT]GC[CAT]|C 332
BspHI T|CATGA 837
BspT107I(HgiCI) G|G[TC][AG]CC 585
BsrI ACTGGN| 905
BssKI |CCNGG 789
BstNI CC|[AT]GG 789
BstUI CG|CG 511
BstYI Pu|GATCPy 648, 706
DdeI C|TNAG 256, 849
DpnI GA-CH3|TC 647, 656, 705, 833, 920
DpnII |GATC 647, 656, 705, 833, 920
EcoRI G|AATTC 871
Fnu4HI GC|NGC 513, 675, 693, 699, 751, 771
HaeII PuGCGC|Py 730
HhaI GCG|C 729
HinP1I G|CGC 729
HindIII A|AGCTT 215, 247, 469, 863
HinfI G|ANTC 24, 77, 390, 411, 432, 723
HpaII C|CGG 566, 634, 776
Hpy188I TCN|GA 21, 80, 177, 618, 711, 848, 879
Hpy99I CG[AT]CG| 327, 589
HpyCH4III ACN|GT 91, 325, 367, 587, 602, 715, 765, 783, 915
HpyCH4IV A|CGT 165, 652
MboI |GATC 647, 656, 705, 833, 920
MseI T|TAA 11, 194, 201, 210, 267, 375, 471, 627, 668
MslI CAPyNN|NNPuTG 620
MspA1I C[AC]G|C[GT]G 701
MspI C|CGG 566, 634, 776
MwoI GCNNNNN|NNGC 699, 727
N.BstNBI GAGTCNNNN|N 82
NlaIII CATG| 836
NlaIV GGN|NCC 585, 774, 786
PmlI CAC|GTG 166
PspGI |CC[AT]GG 789
PvuII CAG|CTG 701
RsaI GT|AC 385, 907
Sau3AI |GATC 647, 656, 705, 833, 920
ScrFI CC|NGG 789
SfcI C|TPuPyAG 146
SmlI C|TPyPuAG 250, 278, 355
Taqƒ¿I T|CGA 110
TfiI G|A[AT]TC 24, 390, 411, 432, 723
TseI G|C[AT]GC 699, 751
Tsp45I |GT[CG]AC 424, 519, 762, 780
Tsp509I |AATT 227, 629, 797, 870, 929
TspRI NNCA[CG]TGNN| 30, 766, 905


Click here to view TAIR data

>AT2G22430.1 length:936
ATGATGAAGA GATTAAGTAG TTCAGATTCA GTGGGTGGTC TCATCTCTTT 
50
ATGTCCTACA ACTTCCACAG ATGAGCAGAG TCCGAGGAGA TACGGTGGGA 
100
GAGAGTTTCA GTCGATGCTT GAAGGATACG AGGAAGAAGA AGAAGCTATA 
150
GTAGAAGAAA GAGGACACGT GGGCTTGTCG GAGAAGAAGA GAAGGTTAAG 
200
CATTAACCAA GTTAAAGCTT TGGAGAAGAA TTTTGAGTTA GAGAATAAGC 
250
TTGAGCCTGA GAGGAAAGTT AAGTTAGCTC AAGAACTTGG TCTTCAACCT 
300
CGTCAAGTTG CTGTTTGGTT TCAAAACCGT CGTGCTCGGT GGAAGACAAA 
350
ACAGCTTGAG AAAGATTACG GTGTTCTTAA AACCCAGTAC GATTCTCTCC 
400
GTCATAACTT TGATTCCCTC CGCCGTGACA ATGAATCTCT CCTTCAAGAG 
450
ATTAGTAAAC TGAAAACGAA GCTTAATGGA GGAGGAGGAG AAGAAGAAGA 
500
AGAAGAGAAC AACGCGGCGG TGACAACGGA GAGTGATATT TCGGTCAAGG 
550
AGGAAGAAGT TTCGTTGCCG GAGAAGATTA CAGAGGCACC GTCGTCTCCT 
600
CCACAGTTTC TTGAACATTC TGATGGTCTT AATTACCGGA GTTTCACAGA 
650
TCTACGTGAT CTTCTTCCAT TAAAGGCGGC GGCTTCTTCA TTCGCCGCCG 
700
CAGCTGGATC TTCAGACAGT AGCGATTCAA GCGCTCTGCT GAATGAAGAA 
750
AGCAGCTCTA ATGTCACTGT GGCGGCTCCG GTGACGGTTC CAGGAGGTAA 
800
TTTCTTCCAG TTTGTGAAAA TGGAGCAGAC GGAGGATCAT GAGGACTTTC 
850
TGAGTGGAGA AGAAGCTTGT GAATTCTTTT CCGATGAACA ACCGCCGTCT 
900
CTACACTGGT ACTCCACCGT TGATCATTGG AATTGA
950

>AT2G22430.1 longest ORF length:311
MMKRLSSSDS VGGLISLCPT TSTDEQSPRR YGGREFQSML EGYEEEEEAI 
50
VEERGHVGLS EKKRRLSINQ VKALEKNFEL ENKLEPERKV KLAQELGLQP 
100
RQVAVWFQNR RARWKTKQLE KDYGVLKTQY DSLRHNFDSL RRDNESLLQE 
150
ISKLKTKLNG GGGEEEEEEN NAAVTTESDI SVKEEEVSLP EKITEAPSSP 
200
PQFLEHSDGL NYRSFTDLRD LLPLKAAASS FAAAAGSSDS SDSSALLNEE 
250
SSSNVTVAAP VTVPGGNFFQ FVKMEQTEDH EDFLSGEEAC EFFSDEQPPS 
300
LHWYSTVDHW N
350