fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT2G22800 HAT9 Homeobox-leucine zipper protein family (.1)

>AT2G22800.1 CDS map

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Uncut enzymes: Acc65I, AccI, AccIII(BspMII), AclI, AfeI, AflII, AflIII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, ApoI, AscI, AseI, AvrII, BaeI, BalI, BamHI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BglII, BlpI, BmrI, BpmI, BsaAI, BsaBI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsiHKAI, BsiWI, BslI, BsmAI, BsmBI, BsmFI, BsmI, Bsp1286I, BspDI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrFI, BsrGI, BsrI, BssHII, BssSI, BstAPI, BstBI, BstF5I, BstXI, BstYI, BstZ17I, Bsu36I, BtrI, BtsI, Cfr10I, ClaI, DraI, DraIII, DrdI, EagI, EarI, EciI, EcoNI, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HhaI, HinP1I, HpaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, NaeI, , NarI, NciI, NcoI, NdeI, NgoMIV, NheI, NotI, NruI, NsiI, PI-PspI, PI-SceI(VDE), PacI, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PshAI, PspOMI, PvuI, RsrII, SacI, SalI, SapI, SbfI, ScaI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, StyI, SwaI, TspRI, Tth111I, XbaI, XcmI, XmaI, XmnI
Name Recognition sequence Cut positions
AatII GACGT|C 186
AccII(FnuDII) CG|CG 724
AciI C|CGC 723
AluI AG|CT 102, 163, 171, 380, 435, 495, 757, 814
AvaI C|PyCGPuG 106, 132
AvaII G|G[AT]CC 45
BfaI C|TAG 330, 429, 450
BglI GCCNNNN|NGGC 133
BsaHI GPu|CGPyC 186
BsaJI C|CNNGG 143, 152, 725
BsaWI [AT]|CCGG[AT] 160
BsoBI C|PyCGPuG 106, 132
BssKI |CCNGG 487
BstEII G|GTNACC 148, 157
BstNI CC|[AT]GG 487
BstUI CG|CG 724
BtgI C|CPuPyGG 152, 725
Cac8I GCN|NGC 633
DdeI C|TNAG 342, 444, 610
DpnI GA-CH3|TC 137, 389
DpnII |GATC 137, 389
EaeI Py|GGCCPu 749
EcoO109I PuG|GNCCPy 46
Fnu4HI GC|NGC 676, 682, 709, 813
HaeIII GG|CC 447, 748
HincII GTPy|PuAC 117
HindIII A|AGCTT 381
HinfI G|ANTC 119, 202, 258, 440, 581, 608, 641, 670
HpaII C|CGG 159, 263
Hpy188I TCN|GA 82, 182, 572
Hpy99I CG[AT]CG| 112
HpyCH4III ACN|GT 150, 247
HpyCH4IV A|CGT 185
HpyCH4V TG|CA 17, 624, 634, 811
MboI |GATC 137, 389
MseI T|TAA 402
MslI CAPyNN|NNPuTG 311, 628
MspA1I C[AC]G|C[GT]G 198, 436, 714, 725
MspI C|CGG 159, 263
MwoI GCNNNNN|NNGC 133, 682, 756
N.BstNBI GAGTCNNNN|N 207, 263
NlaIII CATG| 15, 305, 622, 628
NlaIV GGN|NCC 46
NspI PuCATG|Py 16, 623, 629
PaeR7I C|TCGAG 106
PpuMI PuG|G[AT]CCPy 46
PsiI TTA|TAA 293
PspGI |CC[AT]GG 487
PstI CTGCA|G 812
PvuII CAG|CTG 436
RsaI GT|AC 75, 744
SacII CCGC|GG 725
Sau3AI |GATC 137, 389
Sau96I G|GNCC 45
ScrFI CC|NGG 487
SfcI C|TPuPyAG 812
SmlI C|TPyPuAG 106, 216, 373
StuI AGG|CCT 448
Taqƒ¿I T|CGA 105, 638
TfiI G|A[AT]TC 440, 581, 670
TliI C|TCGAG 106
TseI G|C[AT]GC 712, 813
Tsp45I |GT[CG]AC 156
Tsp509I |AATT 55, 65, 603
XhoI C|TCGAG 106


Click here to view TAIR data

>AT2G22800.1 length:825
ATGGGTTTTG ATGATACATG CAACACAGGT CTTGTTCTTG GATTAGGTCC 
50
CTCACCAATT CCAAATAATT ACAATAGTAC CATCAGACAA TCCTCCGTTT 
100
ACAAGCTCGA GCCGTCGTTG ACTCTATGCC TCTCGGGCGA TCCCTCGGTT 
150
ACCGTGGTGA CCGGAGCTGA CCAGCTATGC CGTCAGACGT CATCTCACAG 
200
CGGAGTCTCT TCTTTCTCAA GCGGGAGGGT GGTGAAAAGA GAGAGAGACG 
250
GTGGCGAAGA GTCGCCGGAG GAGGAAGAGA TGACGGAGAG AGTTATAAGT 
300
GATTACCATG AAGATGAAGA AGGTATTAGT GCTAGAAAAA AACTTAGGCT 
350
TACGAAACAA CAATCTGCTC TTCTTGAGGA AAGCTTCAAG GATCATAGCA 
400
CCCTTAATCC CAAACAAAAG CAAGTTCTGG CTAGACAGCT GAATCTAAGG 
450
CCTAGACAAG TTGAAGTATG GTTTCAAAAT AGAAGAGCCA GGACAAAGCT 
500
GAAGCAAACA GAAGTAGATT GTGAGTTTTT GAAGAAGTGT TGTGAAACAT 
550
TAGCAGATGA GAACATAAGA CTTCAGAAAG AGATTCAAGA ACTCAAAACC 
600
CTAAAATTGA CTCAGCCCTT TTACATGCAC ATGCCTGCAT CGACTCTAAC 
650
GAAGTGTCCT TCTTGTGAGA GAATCGGCGG CGGCGGCGGG GGTAATGGAG 
700
GAGGAGGTGG CGGCAGCGGG GCTACCGCGG TGATTGTAGA TGGAAGTACG 
750
GCCAAAGGAG CTTTCTCTAT CTCCTCAAAG CCTCACTTCT TCAACCCTTT 
800
TACTAACCCA TCTGCAGCTT GTTGA
850

>AT2G22800.1 longest ORF length:274
MGFDDTCNTG LVLGLGPSPI PNNYNSTIRQ SSVYKLEPSL TLCLSGDPSV 
50
TVVTGADQLC RQTSSHSGVS SFSSGRVVKR ERDGGEESPE EEEMTERVIS 
100
DYHEDEEGIS ARKKLRLTKQ QSALLEESFK DHSTLNPKQK QVLARQLNLR 
150
PRQVEVWFQN RRARTKLKQT EVDCEFLKKC CETLADENIR LQKEIQELKT 
200
LKLTQPFYMH MPASTLTKCP SCERIGGGGG GNGGGGGGSG ATAVIVDGST 
250
AKGAFSISSK PHFFNPFTNP SAAC
300