fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT2G23760 BLH4, SAW2 SAWTOOTH 2, BEL1-like homeodomain 4 (.1.2.3)

>AT2G23760.1 CDS map

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Uncut enzymes: Acc65I, AccIII(BspMII), AclI, AfeI, AflII, AhdI, AlwI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvrII, BaeI, BamHI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BglII, BlpI, BmrI, BpmI, BsaI, BsaXI, BseRI, BsgI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BspDI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrGI, BssHII, BssSI, BstEII, BstF5I, BstXI, BstZ17I, Bsu36I, BtsI, Cac8I, ClaI, DraI, DraIII, EarI, EciI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HindIII, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MlyI, MnlI, MslI, N.BstNBI, NaeI, , NarI, NciI, NgoMIV, NheI, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PleI, PmeI, PshAI, PsiI, PspOMI, PstI, PvuI, RsrII, SacI, SacII, SapI, SbfI, ScaI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, StuI, SwaI, TliI, Tth111I, XbaI, XhoI, XmaI
Name Recognition sequence Cut positions
AatII GACGT|C 1726
AccI GT|[AC][TG]AC 240, 1744, 1814
AccII(FnuDII) CG|CG 1033, 1099, 1194, 1696
AciI C|CGC 123, 162, 359, 486, 561, 1193, 1277, 1602, 1671
AflIII A|CPuPyGT 707, 1697, 1714, 1796
AgeI A|CCGGT 829
AluI AG|CT 7, 490, 871, 933, 1057, 1113, 1124, 1131, 1318
AlwNI CAGNNN|CTG 1160
ApoI Pu|AATTPy 146, 609, 717
AvaI C|PyCGPuG 1170
AvaII G|G[AT]CC 850, 959, 1777
BalI TGG|CCA 385
BclI T|GATCA 234
BfaI C|TAG 254, 1074, 1136, 1208, 1431
BglI GCCNNNN|NGGC 1825
BsaAI PyAC|GTPu 439, 1713
BsaBI GATNN|NNATC 41, 90, 407
BsaHI GPu|CGPyC 1726
BsaJI C|CNNGG 51, 195, 500, 674, 1169
BsaWI [AT]|CCGG[AT] 136, 150, 217, 829, 1085
BsiEI CGPuPy|CG 863
BsiHKAI G[AT]GC[AT]|C 140
BslI CCNNNNN|NNGG 201, 697, 1022, 1284
BsoBI C|PyCGPuG 1170
Bsp1286I G[GAT]GC[CAT]|C 140
BsrDI GCAATGNN| 1071
BsrFI Pu|CCGGPy 735, 829
BsrI ACTGGN| 1390, 1789
BssKI |CCNGG 195
BstAPI GCANNNN|NTGC 1161, 1220
BstBI TT|CGAA 720
BstNI CC|[AT]GG 195
BstUI CG|CG 1033, 1099, 1194, 1696
BstYI Pu|GATCPy 701
BtgI C|CPuPyGG 674
BtrI CAC|GTC 1741
Cfr10I [AG]|CCGG[TC] 735, 829
DdeI C|TNAG 798, 1314, 1376
DpnI GA-CH3|TC 84, 233, 401, 424, 700, 902
DpnII |GATC 84, 233, 401, 424, 700, 902
DrdI GACNNNN|NNGTC 1741
EaeI Py|GGCCPu 385, 863
EagI C|GGCCG 863
EcoNI CCTNN|NNNAGG 201
EcoO109I PuG|GNCCPy 851
EcoRI G|AATTC 609, 717
Fnu4HI GC|NGC 208, 356, 362, 486, 525, 678, 1035, 1123, 1152, 1161, 1193, 1671
HaeIII GG|CC 384, 862
HhaI GCG|C 1032
HinP1I G|CGC 1032
HincII GTPy|PuAC 1176, 1744
HinfI G|ANTC 55, 76, 120, 227, 593, 1647, 1771
HpaI GTT|AAC 1176
HpaII C|CGG 135, 149, 165, 216, 734, 828, 864, 896, 1084
Hpy188I TCN|GA 177, 399, 427, 905, 1692
Hpy99I CG[AT]CG| 128, 341, 963, 1618, 1667, 1706, 1742
HpyCH4III ACN|GT 248, 268, 432, 965, 1593, 1704
HpyCH4IV A|CGT 438, 707, 1282, 1712, 1725, 1740, 1761, 1794
HpyCH4V TG|CA 354, 523, 990, 1162
MboI |GATC 84, 233, 401, 424, 700, 902
MluI A|CGCGT 1697
MscI TGG|CCA 385
MseI T|TAA 1116, 1175, 1305, 1341
MspA1I C[AC]G|C[GT]G 1125
MspI C|CGG 135, 149, 165, 216, 734, 828, 864, 896, 1084
MwoI GCNNNNN|NNGC 205, 362, 495, 870, 1065, 1158, 1199, 1220, 1331, 1825
NcoI C|CATGG 674
NdeI CA|TATG 301, 1246
NlaIII CATG| 381, 673, 1269
NlaIV GGN|NCC 214, 430, 850, 1041, 1777
PflMI CCANNNN|NTGG 1022
PmlI CAC|GTG 439, 1713
PpuMI PuG|G[AT]CCPy 851
PspGI |CC[AT]GG 195
PvuII CAG|CTG 1125
RsaI GT|AC 967, 1045, 1348
SalI G|TCGAC 1744
Sau3AI |GATC 84, 233, 401, 424, 700, 902
Sau96I G|GNCC 850, 959, 1777
ScrFI CC|NGG 195
SmlI C|TPyPuAG 604, 740
SspI AAT|ATT 1831
StyI C|C[AT][AT]GG 51, 674
Taqƒ¿I T|CGA 719, 1011, 1329, 1628, 1743
TfiI G|A[AT]TC 55, 76, 120, 227, 593, 1771
TseI G|C[AT]GC 356, 362, 489, 525, 1123, 1161
Tsp45I |GT[CG]AC 29, 271, 1732, 1792
Tsp509I |AATT 145, 576, 608, 716, 1415
TspRI NNCA[CG]TGNN| 1594, 1732
XcmI CCANNNNN|NNNNTGG 642
XmnI GAANN|NNTTC 60, 543, 1009


Click here to view TAIR data

>AT2G23760.1 length:1884
ATGGGTTTAG CTACTACAAC TTCTTCTATG TCACAAGATT ATCATCATCA 
50
CCAAGGAATC TTTTCCTTCT CTAATGGATT CCACCGATCA TCATCAACCA 
100
CTCATCAAGA GGAAGTAGAT GAATCCGCCG TCGTCTCCGG TGCTCAAATT 
150
CCGGTTTATG AAACCGCCGG AATGTTGTCT GAAATGTTTG CTTACCCTGG 
200
CGGAGGTGGC GGCGGTTCCG GTGGAGAGAT TCTTGATCAG TCTACTAAAC 
250
AGTTGCTAGA GCAACAAAAC CGTCACAACA ACAACAATAA CTCAACTCTT 
300
CATATGTTAT TACCAAATCA TCATCAAGGT TTTGCTTTCA CCGACGAAAA 
350
CACTATGCAG CCGCAGCAAC AACAACACTT TACATGGCCA TCTTCCTCCT 
400
CCGATCATCA TCAAAACCGA GATATGATCG GAACCGTCCA CGTGGAAGGA 
450
GGAAAGGGTT TGTCTTTATC TCTCTCATCT TCATTAGCCG CAGCTAAAGC 
500
CGAGGAATAT AGAAGCATTT ATTGTGCAGC CGTTGATGGA ACTTCTTCTT 
550
CTTCTAACGC ATCCGCTCAT CATCATCAAT TCAATCAGTT CAAGAATCTT 
600
CTTCTTGAGA ATTCTTCTTC TCAACATCAT CACCATCAAG TTGTTGGACA 
650
TTTTGGTTCA TCATCATCAT CTCCCATGGC GGCTTCTTCA TCCATTGGAG 
700
GGATCTACAC GTTGAGGAAT TCGAAATATA CGAAACCGGC TCAAGAGTTG 
750
TTGGAAGAGT TTTGTAGTGT TGGAAGAGGA CATTTCAAGA AGAACAAACT 
800
TAGTAGGAAC AACTCAAACC CTAATACTAC CGGTGGAGGA GGAGGCGGAG 
850
GGTCCTCGTC ATCGGCCGGA ACAGCTAATG ATAGTCCTCC TTTGTCTCCG 
900
GCTGATCGGA TTGAACATCA AAGAAGAAAA GTCAAGCTAC TATCTATGCT 
950
TGAAGAGGTG GACCGACGGT ACAACCACTA CTGCGAACAA ATGCAAATGG 
1000
TAGTGAACTC ATTCGACCAA GTAATGGGTT ACGGCGCGGC GGTTCCGTAC 
1050
ACGACATTAG CTCAAAAGGC AATGTCTAGG CATTTCCGGT GTTTGAAAGA 
1100
CGCGGTAGCG GTTCAGCTTA AACGCAGCTG TGAGCTTCTA GGGGATAAAG 
1150
AGGCGGCAGG GGCTGCATCC TCGGGGTTAA CCAAAGGGGA AACGCCGCGA 
1200
TTGCGTTTGC TAGAGCAGAG TTTGCGTCAG CAACGAGCGT TTCATCATAT 
1250
GGGTATGATG GAGCAAGAGG CATGGAGACC GCAACGTGGT TTGCCTGAAC 
1300
GCTCCGTTAA TATCCTTAGA GCTTGGCTAT TCGAGCATTT TCTTAATCCG 
1350
TACCCAAGCG ATGCTGATAA GCACCTCTTA GCACGACAGA CTGGTTTATC 
1400
CAGAAATCAG GTGTCAAATT GGTTCATAAA TGCTAGGGTT CGCCTATGGA 
1450
AACCAATGGT GGAAGAGATG TATCAACAAG AAGCAAAAGA AAGAGAAGAA 
1500
GCAGAAGAAG AAAATGAAAA TCAACAACAA CAAAGAAGAC AGCAACAAAC 
1550
AAACAACAAC GACACGAAAC CCAACAACAA TGAAAACAAC TTCACTGTCA 
1600
TAACCGCACA AACTCCAACG ACGATGACAT CGACACATCA CGAAAACGAC 
1650
TCTTCATTCC TCTCTTCCGT CGCCGCCGCT TCTCACGGCG GTTCAGACGC 
1700
GTTCACCGTC GCCACGTGTC AGCAAGACGT CAGTGACTTC CACGTCGACG 
1750
GAGATGGTGT GAACGTCATA AGATTCGGGA CCAAACAGAC TGGTGACGTG 
1800
TCTCTTACGC TTGGTCTACG CCACTCTGGC AATATTCCTG ATAAGAACAC 
1850
TTCTTTCTCC GTTAGAGACT TTGGAGATTT TTAG
1900

>AT2G23760.1 longest ORF length:627
MGLATTTSSM SQDYHHHQGI FSFSNGFHRS SSTTHQEEVD ESAVVSGAQI 
50
PVYETAGMLS EMFAYPGGGG GGSGGEILDQ STKQLLEQQN RHNNNNNSTL 
100
HMLLPNHHQG FAFTDENTMQ PQQQQHFTWP SSSSDHHQNR DMIGTVHVEG 
150
GKGLSLSLSS SLAAAKAEEY RSIYCAAVDG TSSSSNASAH HHQFNQFKNL 
200
LLENSSSQHH HHQVVGHFGS SSSSPMAASS SIGGIYTLRN SKYTKPAQEL 
250
LEEFCSVGRG HFKKNKLSRN NSNPNTTGGG GGGGSSSSAG TANDSPPLSP 
300
ADRIEHQRRK VKLLSMLEEV DRRYNHYCEQ MQMVVNSFDQ VMGYGAAVPY 
350
TTLAQKAMSR HFRCLKDAVA VQLKRSCELL GDKEAAGAAS SGLTKGETPR 
400
LRLLEQSLRQ QRAFHHMGMM EQEAWRPQRG LPERSVNILR AWLFEHFLNP 
450
YPSDADKHLL ARQTGLSRNQ VSNWFINARV RLWKPMVEEM YQQEAKEREE 
500
AEEENENQQQ QRRQQQTNNN DTKPNNNENN FTVITAQTPT TMTSTHHEND 
550
SSFLSSVAAA SHGGSDAFTV ATCQQDVSDF HVDGDGVNVI RFGTKQTGDV 
600
SLTLGLRHSG NIPDKNTSFS VRDFGDF
650