fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT2G24430 ANAC039, ANAC038 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2)

>AT2G24430.1 CDS map

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Uncut enzymes: AatII, Acc65I, AccI, AccIII(BspMII), AclI, AfeI, AflII, AflIII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApoI, AscI, AseI, AvrII, BaeI, BamHI, BanI, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BglI, BglII, BmrI, BpmI, BsaAI, BsaBI, BsaHI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BspDI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrFI, BsrGI, BssHII, BstAPI, BstBI, BstEII, BstNI, BstXI, BstYI, BstZ17I, Bsu36I, BtrI, BtsI, Cac8I, Cfr10I, ClaI, DraI, DraIII, DrdI, EagI, EarI, EciI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HhaI, HinP1I, HincII, HpaI, HphI, HpyCH4III, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, NaeI, , NarI, NdeI, NgoMIV, NheI, NotI, NruI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PleI, PmeI, PmlI, PpuMI, PsiI, PspGI, PspOMI, PstI, PvuI, PvuII, RsrII, SalI, SapI, SbfI, ScaI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, StuI, SwaI, TfiI, TliI, Tsp45I, Tth111I, XbaI, XcmI, XhoI, XmaI, XmnI
Name Recognition sequence Cut positions
AccII(FnuDII) CG|CG 856
AciI C|CGC 629, 824, 855
AluI AG|CT 40, 81, 177, 379, 694, 699, 756
ApaLI G|TGCAC 812
AvaI C|PyCGPuG 648
AvaII G|G[AT]CC 233, 818
BalI TGG|CCA 937
BanII GPuGCPy|C 380, 700, 790
BfaI C|TAG 692
BlpI GC|TNAGC 698
BsaJI C|CNNGG 172, 332, 737, 804, 857
BsaWI [AT]|CCGG[AT] 236
BsiHKAI G[AT]GC[AT]|C 380, 700, 812
BslI CCNNNNN|NNGG 172, 786, 917
BsoBI C|PyCGPuG 648
Bsp1286I G[GAT]GC[CAT]|C 380, 700, 790, 812
BsrI ACTGGN| 816, 935
BssKI |CCNGG 51, 130, 230
BssSI C|TCGTG 386
BstF5I GGATGNN| 76, 348, 850, 928
BstUI CG|CG 856
BtgI C|CPuPyGG 172, 737, 857
DdeI C|TNAG 184, 697, 785
DpnI GA-CH3|TC 11, 116, 152
DpnII |GATC 11, 116, 152
EaeI Py|GGCCPu 937
EcoNI CCTNN|NNNAGG 786
Fnu4HI GC|NGC 20, 529, 755, 824, 855
HaeIII GG|CC 936
HindIII A|AGCTT 41
HinfI G|ANTC 709, 741
HpaII C|CGG 50, 129, 229, 235
Hpy188I TCN|GA 58, 68, 165, 333, 609
Hpy99I CG[AT]CG| 70, 247, 271
HpyCH4IV A|CGT 147
HpyCH4V TG|CA 411, 811, 914
MboI |GATC 11, 116, 152
MscI TGG|CCA 937
MseI T|TAA 102, 156, 660
MslI CAPyNN|NNPuTG 736, 775
MspA1I C[AC]G|C[GT]G 857
MspI C|CGG 50, 129, 229, 235
MwoI GCNNNNN|NNGC 176, 526, 864
N.BstNBI GAGTCNNNN|N 714
NciI CC|[CG]GG 51, 130, 230
NcoI C|CATGG 172, 737
NlaIII CATG| 171, 409, 413, 673, 736, 775, 916
NlaIV GGN|NCC 233
NsiI ATGCA|T 412
NspI PuCATG|Py 776
PflMI CCANNNN|NTGG 917
PshAI GACNN|NNGTC 361
RsaI GT|AC 214, 241, 871
SacI GAGCT|C 380, 700
SacII CCGC|GG 857
Sau3AI |GATC 11, 116, 152
Sau96I G|GNCC 233, 818
ScrFI CC|NGG 51, 130, 230
SmlI C|TPyPuAG 705, 844
SspI AAT|ATT 658
StyI C|C[AT][AT]GG 172, 737, 804
Taqƒ¿I T|CGA 421
TseI G|C[AT]GC 20, 529, 755
Tsp509I |AATT 599
TspRI NNCA[CG]TGNN| 816, 914


Click here to view TAIR data

>AT2G24430.1 length:951
ATGGAACAAG GAGATCATCA GCAGCATAAG AAAGAAGAAG AAGCTTTGCC 
50
ACCGGGTTTC AGATTTCATC CGACGGATGA GGAGCTAATC TCATATTACT 
100
TGGTTAATAA GATTGCCGAT CAAAACTTCA CCGGGAAAGC AATCGCTGAC 
150
GTTGATCTTA ACAAGTCCGA GCCATGGGAG CTTCCTGAGA AGGCGAAAAT 
200
GGGAGGAAAA GAATGGTACT TTTTTAGCCT CCGGGACCGG AAGTACCCGA 
250
CGGGAGTGAG GACGAATAGG GCGACGAATA CAGGATATTG GAAAACCACA 
300
GGAAAAGACA AAGAGATATT CAATAGCACA ACCTCGGAGT TGGTCGGGAT 
350
GAAGAAGACT TTGGTCTTTT ACAGAGGACG AGCTCCTCGT GGGGAGAAGA 
400
CTTGTTGGGT CATGCATGAG TATCGACTTC ACTCCAAGTC CTCATATAGA 
450
ACCTCCAAGC AAGACGAGTG GGTAGTGTGT AGAGTGTTCA AGAAAACAGA 
500
AGCAACCAAG AAATACATAA GCACCAGTAG CAGCAGCACA AGTCATCACC 
550
ACAACAACCA CACAAGAGCC TCAATACTAT CAACCAACAA CAATAATCCT 
600
AATTACTCAT CAGACCTCCT TCAACTCCCA CCGCATCTAC AACCACACCC 
650
GAGCCTCAAT ATTAACCAAT CCCTCATGGC AAACGCCGTT CACCTAGCTG 
700
AGCTCTCAAG AGTCTTCCGT GCCTCTACAA GCACCACCAT GGACTCTTCT 
750
CATCAGCAGC TAATGAACTA CACCCACATG CCTGTCTCAG GGCTCAACCT 
800
CAACCTTGGC GGTGCACTGG TCCAGCCGCC TCCTGTTGTG TCTCTTGAGG 
850
ATGTTGCCGC GGTTAGTGCT TCGTACAATG GCGAAAACGG GTTTGGAAAT 
900
GTGGAGATGA GCCAGTGCAT GGACTTGGAT GGATACTGGC CATCTTATTG 
950
A
1000

>AT2G24430.1 longest ORF length:316
MEQGDHQQHK KEEEALPPGF RFHPTDEELI SYYLVNKIAD QNFTGKAIAD 
50
VDLNKSEPWE LPEKAKMGGK EWYFFSLRDR KYPTGVRTNR ATNTGYWKTT 
100
GKDKEIFNST TSELVGMKKT LVFYRGRAPR GEKTCWVMHE YRLHSKSSYR 
150
TSKQDEWVVC RVFKKTEATK KYISTSSSST SHHHNNHTRA SILSTNNNNP 
200
NYSSDLLQLP PHLQPHPSLN INQSLMANAV HLAELSRVFR ASTSTTMDSS 
250
HQQLMNYTHM PVSGLNLNLG GALVQPPPVV SLEDVAAVSA SYNGENGFGN 
300
VEMSQCMDLD GYWPSY
350