Locus |
Common name |
Short description |
AT2G24430 |
ANAC039, ANAC038 |
Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) |
>AT2G24430.1 CDS map
>>Show genomic map

Uncut enzymes: AatII, Acc65I, AccI, AccIII(BspMII), AclI, AfeI, AflII, AflIII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApoI, AscI, AseI, AvrII, BaeI, BamHI, BanI, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BglI, BglII, BmrI, BpmI, BsaAI, BsaBI, BsaHI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BspDI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrFI, BsrGI, BssHII, BstAPI, BstBI, BstEII, BstNI, BstXI, BstYI, BstZ17I, Bsu36I, BtrI, BtsI, Cac8I, Cfr10I, ClaI, DraI, DraIII, DrdI, EagI, EarI, EciI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HhaI, HinP1I, HincII, HpaI, HphI, HpyCH4III, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, NaeI, , NarI, NdeI, NgoMIV, NheI, NotI, NruI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PleI, PmeI, PmlI, PpuMI, PsiI, PspGI, PspOMI, PstI, PvuI, PvuII, RsrII, SalI, SapI, SbfI, ScaI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, StuI, SwaI, TfiI, TliI, Tsp45I, Tth111I, XbaI, XcmI, XhoI, XmaI, XmnI
Name |
Recognition sequence |
Cut positions |
AccII(FnuDII)
| CG|CG |
856 |
AciI
| C|CGC |
629, 824, 855 |
AluI
| AG|CT |
40, 81, 177, 379, 694, 699, 756 |
ApaLI
| G|TGCAC |
812 |
AvaI
| C|PyCGPuG |
648 |
AvaII
| G|G[AT]CC |
233, 818 |
BalI
| TGG|CCA |
937 |
BanII
| GPuGCPy|C |
380, 700, 790 |
BfaI
| C|TAG |
692 |
BlpI
| GC|TNAGC |
698 |
BsaJI
| C|CNNGG |
172, 332, 737, 804, 857 |
BsaWI
| [AT]|CCGG[AT] |
236 |
BsiHKAI
| G[AT]GC[AT]|C |
380, 700, 812 |
BslI
| CCNNNNN|NNGG |
172, 786, 917 |
BsoBI
| C|PyCGPuG |
648 |
Bsp1286I
| G[GAT]GC[CAT]|C |
380, 700, 790, 812 |
BsrI
| ACTGGN| |
816, 935 |
BssKI
| |CCNGG |
51, 130, 230 |
BssSI
| C|TCGTG |
386 |
BstF5I
| GGATGNN| |
76, 348, 850, 928 |
BstUI
| CG|CG |
856 |
BtgI
| C|CPuPyGG |
172, 737, 857 |
DdeI
| C|TNAG |
184, 697, 785 |
DpnI
| GA-CH3|TC |
11, 116, 152 |
DpnII
| |GATC |
11, 116, 152 |
EaeI
| Py|GGCCPu |
937 |
EcoNI
| CCTNN|NNNAGG |
786 |
Fnu4HI
| GC|NGC |
20, 529, 755, 824, 855 |
HaeIII
| GG|CC |
936 |
HindIII
| A|AGCTT |
41 |
HinfI
| G|ANTC |
709, 741 |
HpaII
| C|CGG |
50, 129, 229, 235 |
Hpy188I
| TCN|GA |
58, 68, 165, 333, 609 |
Hpy99I
| CG[AT]CG| |
70, 247, 271 |
HpyCH4IV
| A|CGT |
147 |
HpyCH4V
| TG|CA |
411, 811, 914 |
MboI
| |GATC |
11, 116, 152 |
MscI
| TGG|CCA |
937 |
MseI
| T|TAA |
102, 156, 660 |
MslI
| CAPyNN|NNPuTG |
736, 775 |
MspA1I
| C[AC]G|C[GT]G |
857 |
MspI
| C|CGG |
50, 129, 229, 235 |
MwoI
| GCNNNNN|NNGC |
176, 526, 864 |
N.BstNBI
| GAGTCNNNN|N |
714 |
NciI
| CC|[CG]GG |
51, 130, 230 |
NcoI
| C|CATGG |
172, 737 |
NlaIII
| CATG| |
171, 409, 413, 673, 736, 775, 916 |
NlaIV
| GGN|NCC |
233 |
NsiI
| ATGCA|T |
412 |
NspI
| PuCATG|Py |
776 |
PflMI
| CCANNNN|NTGG |
917 |
PshAI
| GACNN|NNGTC |
361 |
RsaI
| GT|AC |
214, 241, 871 |
SacI
| GAGCT|C |
380, 700 |
SacII
| CCGC|GG |
857 |
Sau3AI
| |GATC |
11, 116, 152 |
Sau96I
| G|GNCC |
233, 818 |
ScrFI
| CC|NGG |
51, 130, 230 |
SmlI
| C|TPyPuAG |
705, 844 |
SspI
| AAT|ATT |
658 |
StyI
| C|C[AT][AT]GG |
172, 737, 804 |
Taqƒ¿I
| T|CGA |
421 |
TseI
| G|C[AT]GC |
20, 529, 755 |
Tsp509I
| |AATT |
599 |
TspRI
| NNCA[CG]TGNN| |
816, 914 |
Click here to view TAIR data
>AT2G24430.1 length:951
ATGGAACAAG GAGATCATCA GCAGCATAAG AAAGAAGAAG AAGCTTTGCC | 50 |
ACCGGGTTTC AGATTTCATC CGACGGATGA GGAGCTAATC TCATATTACT | 100 |
TGGTTAATAA GATTGCCGAT CAAAACTTCA CCGGGAAAGC AATCGCTGAC | 150 |
GTTGATCTTA ACAAGTCCGA GCCATGGGAG CTTCCTGAGA AGGCGAAAAT | 200 |
GGGAGGAAAA GAATGGTACT TTTTTAGCCT CCGGGACCGG AAGTACCCGA | 250 |
CGGGAGTGAG GACGAATAGG GCGACGAATA CAGGATATTG GAAAACCACA | 300 |
GGAAAAGACA AAGAGATATT CAATAGCACA ACCTCGGAGT TGGTCGGGAT | 350 |
GAAGAAGACT TTGGTCTTTT ACAGAGGACG AGCTCCTCGT GGGGAGAAGA | 400 |
CTTGTTGGGT CATGCATGAG TATCGACTTC ACTCCAAGTC CTCATATAGA | 450 |
ACCTCCAAGC AAGACGAGTG GGTAGTGTGT AGAGTGTTCA AGAAAACAGA | 500 |
AGCAACCAAG AAATACATAA GCACCAGTAG CAGCAGCACA AGTCATCACC | 550 |
ACAACAACCA CACAAGAGCC TCAATACTAT CAACCAACAA CAATAATCCT | 600 |
AATTACTCAT CAGACCTCCT TCAACTCCCA CCGCATCTAC AACCACACCC | 650 |
GAGCCTCAAT ATTAACCAAT CCCTCATGGC AAACGCCGTT CACCTAGCTG | 700 |
AGCTCTCAAG AGTCTTCCGT GCCTCTACAA GCACCACCAT GGACTCTTCT | 750 |
CATCAGCAGC TAATGAACTA CACCCACATG CCTGTCTCAG GGCTCAACCT | 800 |
CAACCTTGGC GGTGCACTGG TCCAGCCGCC TCCTGTTGTG TCTCTTGAGG | 850 |
ATGTTGCCGC GGTTAGTGCT TCGTACAATG GCGAAAACGG GTTTGGAAAT | 900 |
GTGGAGATGA GCCAGTGCAT GGACTTGGAT GGATACTGGC CATCTTATTG | 950 |
A | 1000 |
>AT2G24430.1 longest ORF length:316
MEQGDHQQHK KEEEALPPGF RFHPTDEELI SYYLVNKIAD QNFTGKAIAD | 50 |
VDLNKSEPWE LPEKAKMGGK EWYFFSLRDR KYPTGVRTNR ATNTGYWKTT | 100 |
GKDKEIFNST TSELVGMKKT LVFYRGRAPR GEKTCWVMHE YRLHSKSSYR | 150 |
TSKQDEWVVC RVFKKTEATK KYISTSSSST SHHHNNHTRA SILSTNNNNP | 200 |
NYSSDLLQLP PHLQPHPSLN INQSLMANAV HLAELSRVFR ASTSTTMDSS | 250 |
HQQLMNYTHM PVSGLNLNLG GALVQPPPVV SLEDVAAVSA SYNGENGFGN | 300 |
VEMSQCMDLD GYWPSY | 350 |
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