fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT2G24830 zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein (.1)

>AT2G24830.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, EcoRI, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, SalI, SmaI, SpeI, XhoI
Name Recognition sequence Cut positions
BglII A|GATCT 383, 1356
EcoRV GAT|ATC 495
HindIII A|AGCTT 1271
PvuII CAG|CTG 1436
SacI GAGCT|C 188
StyI C|C[AT][AT]GG 969
XbaI T|CTAGA 828


Click here to view TAIR data

>AT2G24830.1 length:1494
ATGGCGAGCG AAGAAAACAA CGACCTTGAA AATCTTCTTG ACATTCAGCT 
50
AATTGAACAA AAAGAATCTC TTTCCTCCAT TGACGAAGCC CTACTCTCTG 
100
ACCCATCTAA TCCCGAACTC CTCTCGGTCC ATGAAGAACT TCTCAGTGCA 
150
ATCAAGGAGG TAGAGGAAGG GCTTTTGCAT TTAAAACGAG CTCGGTTATT 
200
GGAGGAAGCT GATATAGTGT TGAATGGTCT AAATCATGAT GCTGGAGTTA 
250
AACCTGAGCA TCTGGAGCCA GAGAAAACTG AAGAGAAAAA GGATTTGGAT 
300
GGATCGAAAT GTCGGTTTCG ACATACTGAT GGTCGTTGGT ATAATGGTCG 
350
TATTATTGGA TTTGAAGGCT CTGATTCTGC TAAGATCTCT TTCCTTACAC 
400
CCACATCTGA GAGTATGATG ATTTGCAAGT TTTTTATGCA GCAGAGGTGT 
450
CGGTTTGGCA GTTCTTGTCG TTCATCACAT GGACTAGATG TGCCGATATC 
500
TTCTCTGAAG AACTATGAAC AGACTGAGTG GAAGCAATTG ATGGTAGGCT 
550
CTAAGATTTG GGCGGTTTCT GGCAGTAAAT ACGATATATG GAGAAAGGCT 
600
GAACTTGAAT CATGGGATGA TGAGTTACAA GTAGGCGGAG TTGTTTTCAG 
650
AGATGATAAA AGCTCTGCAA AGCTAGGATC TGATTCTTTG GCATTATCAG 
700
AGTACGCTCA GATGACTGAT GATGATGGGG AAGAGGAGGA GGAGGAGGAT 
750
GAACAACAGA GTGCTTCAGA TTCTGAAGAT TCTGTTTCAA GTGATTATGA 
800
TGAAGGGTCT CCACAAGGCA TAGGCTTTCT AGAAAGCACA AATCTACCAA 
850
GAGGTGTCCA AACTGACACT GCCTTATTTG CTAAATGGGA GAATCATACT 
900
AGAGGAATAG CTTCGAAGAT GATGGCAAGT ATGGGTTACC GTGAAGGGAT 
950
GGGTCTTGGC GTCTCTGGCC AAGGGATATT AAATCCAATC TTAGTAAAAG 
1000
TACTTCCAGC AAAGCGGTCA CTGGATTATG CTCTTGAGCA CATTAGGAAT 
1050
GGAGAATGTA AAAGCGAGAA ACAAAAGAAG AAAAGGAGCA GAGGTGGGAA 
1100
AAGGAAGCGT GGGAAGAAGT TTGCAGAAGC AGCTAAAGCA GCGAAACAGG 
1150
AAGAGGAATC GAAGCCAGAT TTGTTTAGCT TAATCAATGA ACAAATTTTT 
1200
CCTACCCGCC ATGAGAAAGT ACACAGCGAG TCTGTAAAAA ATAGGCAAAA 
1250
CAAAGGTCCA GTAGACAGGA AAGCTTTGGT TGAATACCAA GATGAAGTCA 
1300
GAGACTTGAA GTTAGAAATG TTGAAACTAG AACAGATGGT GAACAGAAAC 
1350
AAGAAAGATC TAGTTGTTTC AGAGGCTGCG ACGAGAAGAT TGAAAGAAGT 
1400
CCGAAAGGCA TTGGCAAGTA CATTAGCATG TCAAGCAGCT GCCTCAAATG 
1450
CTATAGTAAG CAAAGAGAAT GAGAAGAAAT GGCTCAAGTT TTAG
1500

>AT2G24830.1 longest ORF length:497
MASEENNDLE NLLDIQLIEQ KESLSSIDEA LLSDPSNPEL LSVHEELLSA 
50
IKEVEEGLLH LKRARLLEEA DIVLNGLNHD AGVKPEHLEP EKTEEKKDLD 
100
GSKCRFRHTD GRWYNGRIIG FEGSDSAKIS FLTPTSESMM ICKFFMQQRC 
150
RFGSSCRSSH GLDVPISSLK NYEQTEWKQL MVGSKIWAVS GSKYDIWRKA 
200
ELESWDDELQ VGGVVFRDDK SSAKLGSDSL ALSEYAQMTD DDGEEEEEED 
250
EQQSASDSED SVSSDYDEGS PQGIGFLEST NLPRGVQTDT ALFAKWENHT 
300
RGIASKMMAS MGYREGMGLG VSGQGILNPI LVKVLPAKRS LDYALEHIRN 
350
GECKSEKQKK KRSRGGKRKR GKKFAEAAKA AKQEEESKPD LFSLINEQIF 
400
PTRHEKVHSE SVKNRQNKGP VDRKALVEYQ DEVRDLKLEM LKLEQMVNRN 
450
KKDLVVSEAA TRRLKEVRKA LASTLACQAA ASNAIVSKEN EKKWLKF
500