fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT2G26150 ATHSFA2 heat shock transcription factor A2 (.1.2)

>AT2G26150.1 CDS map

>>Show genomic map




Uncut enzymes: AatII, Acc65I, AccI, AccII(FnuDII), AccIII(BspMII), AciI, AclI, AfeI, AflII, AflIII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvaI, AvaII, AvrII, BaeI, BalI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BlpI, BmrI, BpmI, BsaAI, BsaBI, BsaHI, BsaI, BsaWI, BsaXI, BseRI, BsgI, BsiEI, BsiHKAI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, Bsp1286I, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrFI, BsrGI, BssHII, BssKI, BssSI, BstBI, BstEII, BstNI, BstUI, BstZ17I, Bsu36I, BtgI, BtrI, BtsI, Cac8I, Cfr10I, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HhaI, HinP1I, HincII, HpaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MslI, MspA1I, NaeI, , NarI, NciI, NcoI, NdeI, NgoMIV, NheI, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspGI, PspOMI, PvuI, PvuII, RsaI, RsrII, SacI, SacII, SalI, SapI, SbfI, ScaI, ScrFI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, StuI, SwaI, TliI, TspRI, Tth111I, XbaI, XcmI, XhoI, XmaI, XmnI
Name Recognition sequence Cut positions
AluI AG|CT 206, 294, 520, 554, 574, 749
ApoI Pu|AATTPy 340, 771
BamHI G|GATCC 76
BclI T|GATCA 783, 1005
BfaI C|TAG 90
BglII A|GATCT 987
BsaJI C|CNNGG 638
BslI CCNNNNN|NNGG 102, 638, 753
BspDI AT|CGAT 838
BsrI ACTGGN| 46
BstAPI GCANNNN|NTGC 590
BstF5I GGATGNN| 444, 715, 808, 937
BstXI CCANNNNN|NTGG 334
BstYI Pu|GATCPy 76, 162, 436, 987
ClaI AT|CGAT 838
DdeI C|TNAG 139, 523, 601, 868
DpnI GA-CH3|TC 75, 161, 323, 435, 503, 782, 986, 1004
DpnII |GATC 75, 161, 323, 435, 503, 782, 986, 1004
EcoNI CCTNN|NNNAGG 638
Fnu4HI GC|NGC 57, 573, 614, 828, 927
HaeIII GG|CC 120
HindIII A|AGCTT 750
HinfI G|ANTC 222, 310, 425, 563
HpaII C|CGG 164
Hpy188I TCN|GA 134, 313, 653, 1026
Hpy99I CG[AT]CG| 169, 476
HpyCH4III ACN|GT 33, 128, 177, 469, 587
HpyCH4IV A|CGT 38, 253, 626
HpyCH4V TG|CA 343, 414, 571, 829
MboI |GATC 75, 161, 323, 435, 503, 782, 986, 1004
MseI T|TAA 108, 1033
MspI C|CGG 164
MwoI GCNNNNN|NNGC 590
N.BstNBI GAGTCNNNN|N 568
NlaIII CATG| 406, 447, 506, 779, 992, 997
NlaIV GGN|NCC 76, 1029
PstI CTGCA|G 830
Sau3AI |GATC 75, 161, 323, 435, 503, 782, 986, 1004
Sau96I G|GNCC 120
SfcI C|TPuPyAG 53, 71, 830
SmlI C|TPyPuAG 279
StyI C|C[AT][AT]GG 638
Taqƒ¿I T|CGA 474, 837, 857
TfiI G|A[AT]TC 222, 310, 425
TseI G|C[AT]GC 573, 614, 828, 927
Tsp45I |GT[CG]AC 36
Tsp509I |AATT 272, 339, 770, 854, 917


Click here to view TAIR data

>AT2G26150.1 length:1038
ATGGAAGAAC TGAAAGTGGA AATGGAGGAA GAAACGGTGA CGTTTACTGG 
50
TTCTGTAGCG GCTTCTTCAT CTGTAGGATC CTCTTCCTCT CCTAGACCAA 
100
TGGAAGGGCT TAACGAAACA GGGCCACCAC CGTTTCTGAC TAAGACTTAC 
150
GAAATGGTGG AAGATCCGGC GACGGACACG GTGGTTTCTT GGAGTAATGG 
200
TCGTAACAGC TTTGTGGTGT GGGATTCTCA TAAGTTCTCA ACAACTCTCC 
250
TTCCACGTTA CTTCAAGCAT AGCAATTTCT CAAGTTTTAT TCGTCAGCTC 
300
AATACTTATG GATTCAGAAA GATTGATCCA GATAGATGGG AATTTGCAAA 
350
TGAAGGGTTT TTAGCAGGAC AAAAGCATCT CTTGAAGAAC ATCAAAAGAA 
400
GGAGGAACAT GGGTTTGCAG AATGTGAATC AGCAAGGATC TGGGATGTCA 
450
TGTGTTGAGG TTGGGCAATA CGGTTTCGAC GGGGAGGTTG AGAGGTTGAA 
500
GAGGGATCAT GGTGTGCTTG TAGCTGAGGT AGTTAGGTTG AGGCAACAGC 
550
AACACAGCTC CAAGAGTCAA GTTGCAGCTA TGGAGCAACG GTTGCTTGTT 
600
ACTGAGAAGA GACAGCAGCA GATGATGACG TTCCTTGCCA AGGCGTTGAA 
650
CAATCCGAAC TTTGTTCAGC AGTTTGCGGT TATGAGTAAA GAGAAGAAGA 
700
GTTTGTTTGG TTTGGATGTG GGGAGGAAAC GGAGGCTTAC TTCTACTCCA 
750
AGCTTGGGGA CTATGGAGGA GAATTTGTTA CATGATCAAG AGTTTGATAG 
800
AATGAAGGAT GATATGGAAA TGTTGTTCGC TGCAGCAATC GATGATGAGG 
850
CGAATAATTC GATGCCTACT AAGGAGGAAC AATGTTTGGA GGCTATGAAT 
900
GTGATGATGA GAGATGGTAA TTTGGAAGCA GCGTTGGATG TGAAAGTGGA 
950
AGATTTGGTT GGTTCGCCTT TGGATTGGGA CAGCCAAGAT CTACATGACA 
1000
TGGTTGATCA AATGGGTTTT CTTGGTTCGG AACCTTAA
1050

>AT2G26150.1 longest ORF length:345
MEELKVEMEE ETVTFTGSVA ASSSVGSSSS PRPMEGLNET GPPPFLTKTY 
50
EMVEDPATDT VVSWSNGRNS FVVWDSHKFS TTLLPRYFKH SNFSSFIRQL 
100
NTYGFRKIDP DRWEFANEGF LAGQKHLLKN IKRRRNMGLQ NVNQQGSGMS 
150
CVEVGQYGFD GEVERLKRDH GVLVAEVVRL RQQQHSSKSQ VAAMEQRLLV 
200
TEKRQQQMMT FLAKALNNPN FVQQFAVMSK EKKSLFGLDV GRKRRLTSTP 
250
SLGTMEENLL HDQEFDRMKD DMEMLFAAAI DDEANNSMPT KEEQCLEAMN 
300
VMMRDGNLEA ALDVKVEDLV GSPLDWDSQD LHDMVDQMGF LGSEP
350