Locus |
Common name |
Short description |
AT2G26150 |
ATHSFA2 |
heat shock transcription factor A2 (.1.2) |
>AT2G26150.2 CDS map
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Uncut enzymes: AatII, Acc65I, AccI, AccII(FnuDII), AccIII(BspMII), AciI, AclI, AfeI, AflII, AflIII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvaI, AvaII, AvrII, BaeI, BalI, BamHI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BfaI, BglI, BlpI, BmrI, BpmI, BsaAI, BsaBI, BsaHI, BsaI, BsaWI, BsaXI, BseRI, BsgI, BsiEI, BsiHKAI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, Bsp1286I, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrFI, BsrGI, BsrI, BssHII, BssKI, BssSI, BstBI, BstEII, BstNI, BstUI, BstZ17I, Bsu36I, BtgI, BtrI, BtsI, Cac8I, Cfr10I, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HaeIII, HgaI, HhaI, HinP1I, HincII, HpaI, HpaII, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MslI, MspA1I, MspI, NaeI, , NarI, NciI, NcoI, NdeI, NgoMIV, NheI, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspGI, PspOMI, PvuI, PvuII, RsaI, RsrII, SacI, SacII, SalI, SapI, Sau96I, SbfI, ScaI, ScrFI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, StuI, SwaI, TliI, Tsp45I, TspRI, Tth111I, XbaI, XcmI, XhoI, XmaI, XmnI
Name |
Recognition sequence |
Cut positions |
AluI
| AG|CT |
10, 98, 133, 355, 389, 409, 584 |
ApoI
| Pu|AATTPy |
175, 606 |
BclI
| T|GATCA |
618, 840 |
BglII
| A|GATCT |
822 |
BsaJI
| C|CNNGG |
473 |
BslI
| CCNNNNN|NNGG |
473, 588 |
BspDI
| AT|CGAT |
673 |
BstAPI
| GCANNNN|NTGC |
425 |
BstF5I
| GGATGNN| |
279, 550, 643, 772 |
BstXI
| CCANNNNN|NTGG |
169 |
BstYI
| Pu|GATCPy |
271, 822 |
ClaI
| AT|CGAT |
673 |
DdeI
| C|TNAG |
358, 436, 703 |
DpnI
| GA-CH3|TC |
158, 270, 338, 617, 821, 839 |
DpnII
| |GATC |
158, 270, 338, 617, 821, 839 |
EcoNI
| CCTNN|NNNAGG |
473 |
Fnu4HI
| GC|NGC |
408, 449, 663, 762 |
HindIII
| A|AGCTT |
585 |
HinfI
| G|ANTC |
26, 126, 145, 260, 398 |
Hpy188I
| TCN|GA |
148, 488, 861 |
Hpy99I
| CG[AT]CG| |
311 |
HpyCH4III
| ACN|GT |
304, 422 |
HpyCH4IV
| A|CGT |
57, 461 |
HpyCH4V
| TG|CA |
178, 249, 406, 664 |
MboI
| |GATC |
158, 270, 338, 617, 821, 839 |
MseI
| T|TAA |
868 |
MwoI
| GCNNNNN|NNGC |
425 |
N.BstNBI
| GAGTCNNNN|N |
131, 403 |
NlaIII
| CATG| |
241, 282, 341, 614, 827, 832 |
NlaIV
| GGN|NCC |
864 |
PstI
| CTGCA|G |
665 |
Sau3AI
| |GATC |
158, 270, 338, 617, 821, 839 |
SfcI
| C|TPuPyAG |
665 |
SmlI
| C|TPyPuAG |
83 |
StyI
| C|C[AT][AT]GG |
473 |
Taqƒ¿I
| T|CGA |
309, 672, 692 |
TfiI
| G|A[AT]TC |
26, 145, 260 |
TseI
| G|C[AT]GC |
408, 449, 663, 762 |
Tsp509I
| |AATT |
76, 174, 605, 689, 752 |
Click here to view TAIR data
>AT2G26150.2 length:873
ATGGTCGTAA CAGCTTTGTG GTGTGGGATT CTCATAAGTT CTCAACAACT | 50 |
CTCCTTCCAC GTTACTTCAA GCATAGCAAT TTCTCAAGTT TTATTCGTCA | 100 |
GCTCAATACT TATATGGGTT TCCTATGAGT CTTCAGCTAT AAAGGGATTC | 150 |
AGAAAGATTG ATCCAGATAG ATGGGAATTT GCAAATGAAG GGTTTTTAGC | 200 |
AGGACAAAAG CATCTCTTGA AGAACATCAA AAGAAGGAGG AACATGGGTT | 250 |
TGCAGAATGT GAATCAGCAA GGATCTGGGA TGTCATGTGT TGAGGTTGGG | 300 |
CAATACGGTT TCGACGGGGA GGTTGAGAGG TTGAAGAGGG ATCATGGTGT | 350 |
GCTTGTAGCT GAGGTAGTTA GGTTGAGGCA ACAGCAACAC AGCTCCAAGA | 400 |
GTCAAGTTGC AGCTATGGAG CAACGGTTGC TTGTTACTGA GAAGAGACAG | 450 |
CAGCAGATGA TGACGTTCCT TGCCAAGGCG TTGAACAATC CGAACTTTGT | 500 |
TCAGCAGTTT GCGGTTATGA GTAAAGAGAA GAAGAGTTTG TTTGGTTTGG | 550 |
ATGTGGGGAG GAAACGGAGG CTTACTTCTA CTCCAAGCTT GGGGACTATG | 600 |
GAGGAGAATT TGTTACATGA TCAAGAGTTT GATAGAATGA AGGATGATAT | 650 |
GGAAATGTTG TTCGCTGCAG CAATCGATGA TGAGGCGAAT AATTCGATGC | 700 |
CTACTAAGGA GGAACAATGT TTGGAGGCTA TGAATGTGAT GATGAGAGAT | 750 |
GGTAATTTGG AAGCAGCGTT GGATGTGAAA GTGGAAGATT TGGTTGGTTC | 800 |
GCCTTTGGAT TGGGACAGCC AAGATCTACA TGACATGGTT GATCAAATGG | 850 |
GTTTTCTTGG TTCGGAACCT TAA | 900 |
>AT2G26150.2 longest ORF length:290
MVVTALWCGI LISSQQLSFH VTSSIAISQV LFVSSILIWV SYESSAIKGF | 50 |
RKIDPDRWEF ANEGFLAGQK HLLKNIKRRR NMGLQNVNQQ GSGMSCVEVG | 100 |
QYGFDGEVER LKRDHGVLVA EVVRLRQQQH SSKSQVAAME QRLLVTEKRQ | 150 |
QQMMTFLAKA LNNPNFVQQF AVMSKEKKSL FGLDVGRKRR LTSTPSLGTM | 200 |
EENLLHDQEF DRMKDDMEML FAAAIDDEAN NSMPTKEEQC LEAMNVMMRD | 250 |
GNLEAALDVK VEDLVGSPLD WDSQDLHDMV DQMGFLGSEP | 300 |
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