Locus |
Common name |
Short description |
AT2G27220 |
BLH5 |
BEL1-like homeodomain 5 (.1.2) |
>AT2G27220.1 CDS map
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Uncut enzymes: AatII, Acc65I, AccI, AccIII(BspMII), AclI, AfeI, AflIII, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AvaII, BaeI, BalI, BamHI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BglI, BglII, BmrI, BpmI, BsaAI, BsaBI, BsaHI, BsaI, BsaXI, BseRI, BsgI, BsiHKAI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, Bsp1286I, BspDI, BspEI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrGI, BssHII, BssSI, BstAPI, BstEII, BstXI, BstYI, BstZ17I, Bsu36I, BtrI, BtsI, ClaI, DraI, DraIII, DrdI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HindIII, HpaI, HphI, Hpy99I, HpyCH4IV, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MspA1I, NaeI, , NarI, NciI, NgoMIV, NheI, NotI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspOMI, PstI, PvuI, PvuII, RsrII, SacI, SacII, SalI, SapI, Sau96I, SbfI, ScaI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, StuI, SwaI, Tth111I, XbaI, XmaI
Name |
Recognition sequence |
Cut positions |
AccII(FnuDII)
| CG|CG |
77 |
AciI
| C|CGC |
689, 1005 |
AflII
| C|TTAAG |
643 |
AgeI
| A|CCGGT |
321, 926 |
AluI
| AG|CT |
385, 496, 609, 639, 712 |
ApoI
| Pu|AATTPy |
186, 628, 1050 |
AseI
| AT|TAAT |
838 |
AvaI
| C|PyCGPuG |
155, 845 |
AvrII
| C|CTAGG |
1042 |
BfaI
| C|TAG |
1041 |
BlpI
| GC|TNAGC |
513 |
BsaJI
| C|CNNGG |
300, 422, 766, 1042, 1179 |
BsaWI
| [AT]|CCGG[AT] |
321, 926 |
BsiEI
| CGPuPy|CG |
319 |
BslI
| CCNNNNN|NNGG |
696 |
BsoBI
| C|PyCGPuG |
155, 845 |
BspHI
| T|CATGA |
105, 1076 |
BsrFI
| Pu|CCGGPy |
321, 926 |
BsrI
| ACTGGN| |
802, 867 |
BssKI
| |CCNGG |
378 |
BstBI
| TT|CGAA |
851, 990, 1135 |
BstF5I
| GGATGNN| |
1156 |
BstNI
| CC|[AT]GG |
378 |
BstUI
| CG|CG |
77 |
BtgI
| C|CPuPyGG |
300, 422 |
Cac8I
| GCN|NGC |
80, 495, 789, 1184 |
Cfr10I
| [AG]|CCGG[TC] |
321, 926 |
DdeI
| C|TNAG |
512, 811, 1246 |
DpnI
| GA-CH3|TC |
47, 110, 238, 997 |
DpnII
| |GATC |
47, 110, 238, 997 |
EaeI
| Py|GGCCPu |
1256 |
Fnu4HI
| GC|NGC |
3, 252, 387, 498, 638, 1066 |
HaeIII
| GG|CC |
803, 1181, 1255 |
HhaI
| GCG|C |
303 |
HinP1I
| G|CGC |
303 |
HincII
| GTPy|PuAC |
1230 |
HinfI
| G|ANTC |
21, 62, 68, 217, 333, 815, 984, 1021, 1100, 1227 |
HpaII
| C|CGG |
320, 925 |
Hpy188I
| TCN|GA |
24, 45, 65, 236, 764, 885 |
HpyCH4III
| ACN|GT |
292, 959 |
HpyCH4V
| TG|CA |
393, 468, 588, 1064 |
MboI
| |GATC |
47, 110, 238, 997 |
MseI
| T|TAA |
642, 837, 1209 |
MslI
| CAPyNN|NNPuTG |
421, 532, 677, 1196 |
MspI
| C|CGG |
320, 925 |
MwoI
| GCNNNNN|NNGC |
596, 743 |
N.BstNBI
| GAGTCNNNN|N |
222, 338, 820, 1232 |
NcoI
| C|CATGG |
422 |
NdeI
| CA|TATG |
532 |
NlaIII
| CATG| |
104, 421, 458, 577, 1075, 1096, 1238, 1285 |
NlaIV
| GGN|NCC |
136, 234 |
NruI
| TCG|CGA |
78 |
PaeR7I
| C|TCGAG |
155, 845 |
PspGI
| |CC[AT]GG |
378 |
RsaI
| GT|AC |
933, 961 |
Sau3AI
| |GATC |
47, 110, 238, 997 |
ScrFI
| CC|NGG |
378 |
SmlI
| C|TPyPuAG |
155, 257, 643, 845, 1059 |
StyI
| C|C[AT][AT]GG |
422, 1042 |
Taqƒ¿I
| T|CGA |
154, 844, 850, 989, 1134 |
TfiI
| G|A[AT]TC |
21, 68, 984, 1021, 1100 |
TliI
| C|TCGAG |
155, 845 |
TseI
| G|C[AT]GC |
3, 387, 498, 638, 1066 |
Tsp45I
| |GT[CG]AC |
922, 1198 |
Tsp509I
| |AATT |
185, 261, 627, 827, 1049, 1118 |
TspRI
| NNCA[CG]TGNN| |
867, 1027 |
XcmI
| CCANNNNN|NNNNTGG |
431 |
XhoI
| C|TCGAG |
155, 845 |
XmnI
| GAANN|NNTTC |
189 |
Click here to view TAIR data
>AT2G27220.1 length:1296
ATGGCTGCTT TCTTTCTTGG AGAATCTGAA ATGAGAGAAC ACTCTTCTGA | 50 |
TCTTTTTATG ATGACTCTGA ATCCGTTTCG CGAGCAGACA ACGACCACTA | 100 |
ATGCTCATGA CGATCACTTC TACAACTTGT GCTTTGGTTC CCAACAATAT | 150 |
AGACCTCGAG ATGAAGTAGG TCATATAGAA CAAGGAAATT CTTCCATCTC | 200 |
CACTTTTTCA AACGGAGGAG TCTTCAGGGC TTTGGCTCCG ATCTACTTGA | 250 |
AAGCGGCTCA AGAATTACTC AATGAGATTG TCAATGTTGG AAACGGTAGC | 300 |
CACGGCGCAA AACAAGAGCG ACCGGTGAGT AAAGAGTCCA CGATTTATGG | 350 |
AGTTGAGGAC ATCAATGGTG GCTATAAGCC TGGCGTAGCT GCTTTGCAAA | 400 |
TGAAGAAAGC AAAACTCATC TCCATGGGTG AAATGGTGGA ACAGAGATAC | 450 |
AAGCAATACC ATGACCAAAT GCAGACTATA ATCTCATCGT TTGAGCAAGC | 500 |
TGCGGGTTTA GGCTCAGCAA ACTCATACAC ACATATGGCG TTACAAACAA | 550 |
TATCAAAGCA GTTTCGTGCT GTAAAAGACA TGATAAGTTT GCAAATCAAG | 600 |
CAAATAAACA AGCTCTTGGG ACAAAAGGAA TTTGACGAGC AGCTTAAGAA | 650 |
GTTGGGAAAG ATGGCACATC ACCATTCAAA TGCTTGGAGA CCGCAGAGAG | 700 |
GTTTGCCCGA AAAAGCTGTT TCCGTTCTAC GCTCTTGGCT CTTTGAGCAT | 750 |
TTTCTTCATC CATATCCGAG GGATTTGGAT AAGGTAATGC TTGCCAAACA | 800 |
GACTGGCCTT ACTAAGAGTC AGGTGTCAAA TTGGTTCATT AATGCTCGAG | 850 |
TTCGAATGTG GAAGCCACTG GTGGAGGAAC TTTATTCGGA AGAAATGGAT | 900 |
ATTGAAGAAA GCAGAAAAGG AAGTGACCGG TATAGTACCA AAGGTTCATC | 950 |
TTCAAAGCAA CCGTACAATA ATACAACTTC AAATGAATCT TCGAACACGA | 1000 |
TCCTACCCGC CTTTCGTCAA GGATTCACTG AAACTGAAAC CCCTAGGCAA | 1050 |
AATTCATCCT CAAGTTGCAG CGTAGTCATG AGGTTCACGA AGCAACACAT | 1100 |
GAATCAAGCG AACTTCATCA ATTTCAACGG AGGGTTCGAA AACTATCACA | 1150 |
CAATGGATGG AAACAGCGTC TCCCTTTCCC TCGGCCTGCC TCATTCTTGT | 1200 |
GACCAAACCT TTAATAACAT TCATTTTGAG TCAACAAGTC ATGGAACTGA | 1250 |
GAACTCGGCC ATATATTCAT CTTCAACTTA TCAAATCATG GATTAG | 1300 |
>AT2G27220.1 longest ORF length:431
MAAFFLGESE MREHSSDLFM MTLNPFREQT TTTNAHDDHF YNLCFGSQQY | 50 |
RPRDEVGHIE QGNSSISTFS NGGVFRALAP IYLKAAQELL NEIVNVGNGS | 100 |
HGAKQERPVS KESTIYGVED INGGYKPGVA ALQMKKAKLI SMGEMVEQRY | 150 |
KQYHDQMQTI ISSFEQAAGL GSANSYTHMA LQTISKQFRA VKDMISLQIK | 200 |
QINKLLGQKE FDEQLKKLGK MAHHHSNAWR PQRGLPEKAV SVLRSWLFEH | 250 |
FLHPYPRDLD KVMLAKQTGL TKSQVSNWFI NARVRMWKPL VEELYSEEMD | 300 |
IEESRKGSDR YSTKGSSSKQ PYNNTTSNES SNTILPAFRQ GFTETETPRQ | 350 |
NSSSSCSVVM RFTKQHMNQA NFINFNGGFE NYHTMDGNSV SLSLGLPHSC | 400 |
DQTFNNIHFE STSHGTENSA IYSSSTYQIM D | 450 |
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