fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT2G27220 BLH5 BEL1-like homeodomain 5 (.1.2)

>AT2G27220.1 CDS map

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Uncut enzymes: AatII, Acc65I, AccI, AccIII(BspMII), AclI, AfeI, AflIII, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AvaII, BaeI, BalI, BamHI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BglI, BglII, BmrI, BpmI, BsaAI, BsaBI, BsaHI, BsaI, BsaXI, BseRI, BsgI, BsiHKAI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, Bsp1286I, BspDI, BspEI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrGI, BssHII, BssSI, BstAPI, BstEII, BstXI, BstYI, BstZ17I, Bsu36I, BtrI, BtsI, ClaI, DraI, DraIII, DrdI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HindIII, HpaI, HphI, Hpy99I, HpyCH4IV, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MspA1I, NaeI, , NarI, NciI, NgoMIV, NheI, NotI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspOMI, PstI, PvuI, PvuII, RsrII, SacI, SacII, SalI, SapI, Sau96I, SbfI, ScaI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, StuI, SwaI, Tth111I, XbaI, XmaI
Name Recognition sequence Cut positions
AccII(FnuDII) CG|CG 77
AciI C|CGC 689, 1005
AflII C|TTAAG 643
AgeI A|CCGGT 321, 926
AluI AG|CT 385, 496, 609, 639, 712
ApoI Pu|AATTPy 186, 628, 1050
AseI AT|TAAT 838
AvaI C|PyCGPuG 155, 845
AvrII C|CTAGG 1042
BfaI C|TAG 1041
BlpI GC|TNAGC 513
BsaJI C|CNNGG 300, 422, 766, 1042, 1179
BsaWI [AT]|CCGG[AT] 321, 926
BsiEI CGPuPy|CG 319
BslI CCNNNNN|NNGG 696
BsoBI C|PyCGPuG 155, 845
BspHI T|CATGA 105, 1076
BsrFI Pu|CCGGPy 321, 926
BsrI ACTGGN| 802, 867
BssKI |CCNGG 378
BstBI TT|CGAA 851, 990, 1135
BstF5I GGATGNN| 1156
BstNI CC|[AT]GG 378
BstUI CG|CG 77
BtgI C|CPuPyGG 300, 422
Cac8I GCN|NGC 80, 495, 789, 1184
Cfr10I [AG]|CCGG[TC] 321, 926
DdeI C|TNAG 512, 811, 1246
DpnI GA-CH3|TC 47, 110, 238, 997
DpnII |GATC 47, 110, 238, 997
EaeI Py|GGCCPu 1256
Fnu4HI GC|NGC 3, 252, 387, 498, 638, 1066
HaeIII GG|CC 803, 1181, 1255
HhaI GCG|C 303
HinP1I G|CGC 303
HincII GTPy|PuAC 1230
HinfI G|ANTC 21, 62, 68, 217, 333, 815, 984, 1021, 1100, 1227
HpaII C|CGG 320, 925
Hpy188I TCN|GA 24, 45, 65, 236, 764, 885
HpyCH4III ACN|GT 292, 959
HpyCH4V TG|CA 393, 468, 588, 1064
MboI |GATC 47, 110, 238, 997
MseI T|TAA 642, 837, 1209
MslI CAPyNN|NNPuTG 421, 532, 677, 1196
MspI C|CGG 320, 925
MwoI GCNNNNN|NNGC 596, 743
N.BstNBI GAGTCNNNN|N 222, 338, 820, 1232
NcoI C|CATGG 422
NdeI CA|TATG 532
NlaIII CATG| 104, 421, 458, 577, 1075, 1096, 1238, 1285
NlaIV GGN|NCC 136, 234
NruI TCG|CGA 78
PaeR7I C|TCGAG 155, 845
PspGI |CC[AT]GG 378
RsaI GT|AC 933, 961
Sau3AI |GATC 47, 110, 238, 997
ScrFI CC|NGG 378
SmlI C|TPyPuAG 155, 257, 643, 845, 1059
StyI C|C[AT][AT]GG 422, 1042
Taqƒ¿I T|CGA 154, 844, 850, 989, 1134
TfiI G|A[AT]TC 21, 68, 984, 1021, 1100
TliI C|TCGAG 155, 845
TseI G|C[AT]GC 3, 387, 498, 638, 1066
Tsp45I |GT[CG]AC 922, 1198
Tsp509I |AATT 185, 261, 627, 827, 1049, 1118
TspRI NNCA[CG]TGNN| 867, 1027
XcmI CCANNNNN|NNNNTGG 431
XhoI C|TCGAG 155, 845
XmnI GAANN|NNTTC 189


Click here to view TAIR data

>AT2G27220.1 length:1296
ATGGCTGCTT TCTTTCTTGG AGAATCTGAA ATGAGAGAAC ACTCTTCTGA 
50
TCTTTTTATG ATGACTCTGA ATCCGTTTCG CGAGCAGACA ACGACCACTA 
100
ATGCTCATGA CGATCACTTC TACAACTTGT GCTTTGGTTC CCAACAATAT 
150
AGACCTCGAG ATGAAGTAGG TCATATAGAA CAAGGAAATT CTTCCATCTC 
200
CACTTTTTCA AACGGAGGAG TCTTCAGGGC TTTGGCTCCG ATCTACTTGA 
250
AAGCGGCTCA AGAATTACTC AATGAGATTG TCAATGTTGG AAACGGTAGC 
300
CACGGCGCAA AACAAGAGCG ACCGGTGAGT AAAGAGTCCA CGATTTATGG 
350
AGTTGAGGAC ATCAATGGTG GCTATAAGCC TGGCGTAGCT GCTTTGCAAA 
400
TGAAGAAAGC AAAACTCATC TCCATGGGTG AAATGGTGGA ACAGAGATAC 
450
AAGCAATACC ATGACCAAAT GCAGACTATA ATCTCATCGT TTGAGCAAGC 
500
TGCGGGTTTA GGCTCAGCAA ACTCATACAC ACATATGGCG TTACAAACAA 
550
TATCAAAGCA GTTTCGTGCT GTAAAAGACA TGATAAGTTT GCAAATCAAG 
600
CAAATAAACA AGCTCTTGGG ACAAAAGGAA TTTGACGAGC AGCTTAAGAA 
650
GTTGGGAAAG ATGGCACATC ACCATTCAAA TGCTTGGAGA CCGCAGAGAG 
700
GTTTGCCCGA AAAAGCTGTT TCCGTTCTAC GCTCTTGGCT CTTTGAGCAT 
750
TTTCTTCATC CATATCCGAG GGATTTGGAT AAGGTAATGC TTGCCAAACA 
800
GACTGGCCTT ACTAAGAGTC AGGTGTCAAA TTGGTTCATT AATGCTCGAG 
850
TTCGAATGTG GAAGCCACTG GTGGAGGAAC TTTATTCGGA AGAAATGGAT 
900
ATTGAAGAAA GCAGAAAAGG AAGTGACCGG TATAGTACCA AAGGTTCATC 
950
TTCAAAGCAA CCGTACAATA ATACAACTTC AAATGAATCT TCGAACACGA 
1000
TCCTACCCGC CTTTCGTCAA GGATTCACTG AAACTGAAAC CCCTAGGCAA 
1050
AATTCATCCT CAAGTTGCAG CGTAGTCATG AGGTTCACGA AGCAACACAT 
1100
GAATCAAGCG AACTTCATCA ATTTCAACGG AGGGTTCGAA AACTATCACA 
1150
CAATGGATGG AAACAGCGTC TCCCTTTCCC TCGGCCTGCC TCATTCTTGT 
1200
GACCAAACCT TTAATAACAT TCATTTTGAG TCAACAAGTC ATGGAACTGA 
1250
GAACTCGGCC ATATATTCAT CTTCAACTTA TCAAATCATG GATTAG
1300

>AT2G27220.1 longest ORF length:431
MAAFFLGESE MREHSSDLFM MTLNPFREQT TTTNAHDDHF YNLCFGSQQY 
50
RPRDEVGHIE QGNSSISTFS NGGVFRALAP IYLKAAQELL NEIVNVGNGS 
100
HGAKQERPVS KESTIYGVED INGGYKPGVA ALQMKKAKLI SMGEMVEQRY 
150
KQYHDQMQTI ISSFEQAAGL GSANSYTHMA LQTISKQFRA VKDMISLQIK 
200
QINKLLGQKE FDEQLKKLGK MAHHHSNAWR PQRGLPEKAV SVLRSWLFEH 
250
FLHPYPRDLD KVMLAKQTGL TKSQVSNWFI NARVRMWKPL VEELYSEEMD 
300
IEESRKGSDR YSTKGSSSKQ PYNNTTSNES SNTILPAFRQ GFTETETPRQ 
350
NSSSSCSVVM RFTKQHMNQA NFINFNGGFE NYHTMDGNSV SLSLGLPHSC 
400
DQTFNNIHFE STSHGTENSA IYSSSTYQIM D
450