fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT2G27300 NTL8, ANAC040 Arabidopsis NAC domain containing protein 40, NTM1-like 8 (.1)

>AT2G27300.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, EcoRV, HindIII, HpaI, KpnI, NdeI, NotI, PacI, PstI, SacI, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
NcoI C|CATGG 420
NheI G|CTAGC 715
PvuII CAG|CTG 873
StyI C|C[AT][AT]GG 420


Click here to view TAIR data

>AT2G27300.1 length:1008
ATGTCTAAAG AAGCTGAGAT GTCGATCGCG GTGTCGGCTT TGTTCCCTGG 
50
TTTTAGATTC TCTCCTACTG ATGTTGAACT TATCTCGTAC TATCTTCGTC 
100
GTAAAATCGA TGGTGATGAG AACTCTGTTG CTGTGATTGC TGAGGTCGAG 
150
ATTTACAAGT TCGAGCCGTG GGACTTGCCA GAGGAATCGA AACTGAAATC 
200
GGAGAACGAG TGGTTTTACT TCTGCGCGAG GGGGAGGAAG TACCCGCACG 
250
GGTCACAAAG CCGGCGAGCC ACACAGCTAG GATATTGGAA AGCGACCGGT 
300
AAAGAGCGGA GTGTTAAATC CGGGAACCAA GTTGTTGGAA CCAAGAGAAC 
350
GCTTGTATTT CATATCGGTC GGGCTCCTCG TGGCGAGAGA ACGGAGTGGA 
400
TTATGCATGA ATACTGCATC CATGGAGCCC CACAGGATGC ATTAGTGGTG 
450
TGCCGGTTAA GAAAAAATGC TGATTTTCGG GCTAGTTCGA CCCAAAAAAT 
500
GGAGGATGGT GTTGTGCAAG ACGATGGCTA CGTTGGCCAA AGAGGTGGTT 
550
TGGAGAAGGA GGACAAATCC TACTATGAAT CTGAGCATCA GATACCAAAT 
600
GGTGACATCG CAGAATCATC AAATGTTGTT GAGGATCAGG CCGATACCGA 
650
TGATGATTGT TACGCCGAGA TTCTGAACGA TGATATAATA AAGCTCGACG 
700
AAGAAGCGTT GAAAGCTAGC CAAGCGTTTC GACCAACTAA TCCAACTCAT 
750
CAAGAAACAA TATCAAGCGA GTCATCGAGT AAGAGGTCAA AATGTGGTAT 
800
AAAAAAAGAA TCAACGGAAA CAATGAATTG TTACGCTTTG TTCAGGATCA 
850
AGAACGTTGC CGGAACCGAC TCCAGCTGGA GATTCCCGAA CCCGTTCAAA 
900
ATCAAGAAAG ATGATAGCCA GAGATTGATG AAGAATGTTC TGGCCACTAC 
950
TGTTTTCTTG GCTATCTTAT TTTCTTTCTT TTGGACTGTA TTAATAGCTA 
1000
GGAACTAA
1050

>AT2G27300.1 longest ORF length:335
MSKEAEMSIA VSALFPGFRF SPTDVELISY YLRRKIDGDE NSVAVIAEVE 
50
IYKFEPWDLP EESKLKSENE WFYFCARGRK YPHGSQSRRA TQLGYWKATG 
100
KERSVKSGNQ VVGTKRTLVF HIGRAPRGER TEWIMHEYCI HGAPQDALVV 
150
CRLRKNADFR ASSTQKMEDG VVQDDGYVGQ RGGLEKEDKS YYESEHQIPN 
200
GDIAESSNVV EDQADTDDDC YAEILNDDII KLDEEALKAS QAFRPTNPTH 
250
QETISSESSS KRSKCGIKKE STETMNCYAL FRIKNVAGTD SSWRFPNPFK 
300
IKKDDSQRLM KNVLATTVFL AILFSFFWTV LIARN
350