|
|
|
|
|
|
|
|
| Locus | Common name | Short description |
| AT2G28200 | C2H2-type zinc finger family protein (.1) |
>AT2G28200.1 CDS map
>>Show genomic map
Uncut enzymes: Acc65I, AccII(FnuDII), AccIII(BspMII), AclI, AfeI, AflII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvaII, AvrII, BaeI, BalI, BamHI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BglII, BmrI, BpmI, BsaAI, BsaI, BsaXI, BseRI, BsgI, BsiHKAI, BsmAI, BsmBI, BsmFI, BsmI, Bsp1286I, BspDI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrGI, BsrI, BssHII, BstAPI, BstBI, BstEII, BstF5I, BstNI, BstUI, BstZ17I, Bsu36I, BtgI, BtrI, BtsI, ClaI, DraI, EarI, EciI, EcoNI, EcoO109I, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HhaI, HinP1I, HindIII, HpaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MslI, MspA1I, NaeI, , NarI, NcoI, NdeI, NgoMIV, NheI, NlaIV, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspGI, PspOMI, PstI, PvuI, PvuII, RsrII, SacI, SacII, SapI, Sau96I, SbfI, ScaI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, StuI, StyI, SwaI, TfiI, Tth111I, XbaI, XmaI, XmnI
| Name | Recognition sequence | Cut positions |
| AatII | GACGT|C | 423 |
| AccI | GT|[AC][TG]AC | 426 |
| AciI | C|CGC | 672 |
| AflIII | A|CPuPyGT | 355 |
| AluI | AG|CT | 154, 250, 523, 607 |
| ApoI | Pu|AATTPy | 299, 324 |
| AvaI | C|PyCGPuG | 291 |
| BclI | T|GATCA | 30 |
| BfaI | C|TAG | 327, 441, 468, 521, 856 |
| BlpI | GC|TNAGC | 516 |
| BsaBI | GATNN|NNATC | 712, 767 |
| BsaHI | GPu|CGPyC | 423 |
| BsaJI | C|CNNGG | 418 |
| BsaWI | [AT]|CCGG[AT] | 192, 362 |
| BsiEI | CGPuPy|CG | 131 |
| BsiWI | C|GTACG | 58 |
| BslI | CCNNNNN|NNGG | 731 |
| BsoBI | C|PyCGPuG | 291 |
| BsrFI | Pu|CCGGPy | 133 |
| BssKI | |CCNGG | 601 |
| BssSI | C|TCGTG | 254 |
| BstXI | CCANNNNN|NTGG | 387 |
| BstYI | Pu|GATCPy | 279, 762 |
| Cac8I | GCN|NGC | 403, 606 |
| Cfr10I | [AG]|CCGG[TC] | 133 |
| DdeI | C|TNAG | 430, 515, 589, 792, 824 |
| DpnI | GA-CH3|TC | 29, 72, 278, 712, 761, 788 |
| DpnII | |GATC | 29, 72, 278, 712, 761, 788 |
| DraIII | CACNNN|GTG | 389 |
| DrdI | GACNNNN|NNGTC | 372 |
| EaeI | Py|GGCCPu | 131 |
| EagI | C|GGCCG | 131 |
| EcoRI | G|AATTC | 324 |
| Fnu4HI | GC|NGC | 99, 629, 666 |
| HaeIII | GG|CC | 130, 722 |
| HincII | GTPy|PuAC | 426 |
| HinfI | G|ANTC | 798 |
| HpaII | C|CGG | 132, 191, 275, 361, 510, 600 |
| Hpy188I | TCN|GA | 32, 162, 305, 318, 477, 588 |
| Hpy99I | CG[AT]CG| | 82, 316, 373, 424 |
| HpyCH4III | ACN|GT | 108, 261, 493, 691, 755 |
| HpyCH4IV | A|CGT | 55, 83, 353, 365, 422 |
| HpyCH4V | TG|CA | 472, 664 |
| MboI | |GATC | 29, 72, 278, 712, 761, 788 |
| MseI | T|TAA | 765, 839 |
| MspI | C|CGG | 132, 191, 275, 361, 510, 600 |
| MwoI | GCNNNNN|NNGC | 531, 672, 834 |
| N.BstNBI | GAGTCNNNN|N | 803 |
| NciI | CC|[CG]GG | 601 |
| NlaIII | CATG| | 226, 244, 622 |
| PaeR7I | C|TCGAG | 291 |
| RsaI | GT|AC | 57, 207, 340, 563, 693 |
| SalI | G|TCGAC | 426 |
| Sau3AI | |GATC | 29, 72, 278, 712, 761, 788 |
| ScrFI | CC|NGG | 601 |
| SmlI | C|TPyPuAG | 283, 291 |
| Taqƒ¿I | T|CGA | 80, 290, 425, 728 |
| TliI | C|TCGAG | 291 |
| TseI | G|C[AT]GC | 666 |
| Tsp45I | |GT[CG]AC | 93, 111, 195, 619 |
| Tsp509I | |AATT | 298, 323 |
| TspRI | NNCA[CG]TGNN| | 111 |
| XcmI | CCANNNNN|NNNNTGG | 390 |
| XhoI | C|TCGAG | 291 |
Click here to view TAIR data
>AT2G28200.1 length:861
ATGATGATGG GTCAAGATGA GGTTGGGAGT GATCAGACGC AAATCATAAA | 50 |
AGGGAAACGT ACGAAGCGAC AAAGATCGTC TTCGACGTTT GTGGTGACGG | 100 |
CGGCGACAAC AGTGACTTCA ACAAGTTCAT CGGCCGGTGG AAGTGGAGGA | 150 |
GAAAGAGCTG TTTCAGATGA ATACAACTCG GCGGTTTCGT CTCCGGTGAC | 200 |
TACTGATTGT ACGCAAGAAG AAGAAGACAT GGCGATTTGT CTCATCATGT | 250 |
TAGCTCGTGG GACAGTTCTT CCATCGCCGG ATCTCAAGAA CTCGAGAAAA | 300 |
ATTCATCAGA AGATTTCGTC GGAGAATTCT AGTTTCTATG TGTACGAGTG | 350 |
TAAAACGTGT AACCGGACGT TTTCGTCGTT CCAAGCACTT GGTGGACACA | 400 |
GAGCGAGCCA CAAGAAGCCG AGGACGTCGA CTGAGGAAAA GACTAGACTA | 450 |
CCCCTGACGC AACCCAAGTC TAGTGCATCA GAAGAAGGGC AAAACAGTCA | 500 |
TTTCAAAGTT TCCGGCTCAG CCCTAGCTTC ACAGGCAAGT AACATCATCA | 550 |
ACAAGGCAAA CAAAGTACAC GAGTGTTCCA TCTGCGGTTC TGAGTTCACT | 600 |
TCCGGGCAAG CTCTCGGTGG TCACATGAGG CGGCACAGGA CAGCCGTAAC | 650 |
CACGATTAGC CCCGTTGCAG CCACCGCAGA AGTAAGCAGA AACAGTACAG | 700 |
AGGAAGAGAT TGAGATCAAT ATAGGCCGTT CGATGGAACA GCAGAGGAAA | 750 |
TATCTACCGT TGGATCTTAA TCTACCAGCA CCAGAAGATG ATCTAAGAGA | 800 |
GTCAAAGTTT CAAGGGATAG TATTCTCAGC AACACCAGCG TTAATAGATT | 850 |
GTCATTACTA G | 900 |
>AT2G28200.1 longest ORF length:286
MMMGQDEVGS DQTQIIKGKR TKRQRSSSTF VVTAATTVTS TSSSAGGSGG | 50 |
ERAVSDEYNS AVSSPVTTDC TQEEEDMAIC LIMLARGTVL PSPDLKNSRK | 100 |
IHQKISSENS SFYVYECKTC NRTFSSFQAL GGHRASHKKP RTSTEEKTRL | 150 |
PLTQPKSSAS EEGQNSHFKV SGSALASQAS NIINKANKVH ECSICGSEFT | 200 |
SGQALGGHMR RHRTAVTTIS PVAATAEVSR NSTEEEIEIN IGRSMEQQRK | 250 |
YLPLDLNLPA PEDDLRESKF QGIVFSATPA LIDCHY | 300 |