fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT2G28200 C2H2-type zinc finger family protein (.1)

>AT2G28200.1 genomic map

>>Show CDS map




Uncut enzymes: Acc65I, AccIII(BspMII), AclI, AfeI, AgeI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AvrII, BaeI, BalI, BamHI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BmrI, BpmI, BsaI, BsaXI, BseRI, BsgI, BsmAI, BsmBI, BsmFI, BspEI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrGI, BsrI, BssHII, BstAPI, BstNI, BtrI, EarI, EciI, EcoRV, FauI, FokI, FseI, FspI, HgaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MluI, MlyI, MnlI, MscI, MspA1I, NaeI, , NarI, NgoMIV, NheI, NotI, NruI, PI-PspI, PI-SceI(VDE), PflFI, PflMI, PleI, PmeI, PmlI, PshAI, PspGI, PspOMI, PstI, PvuI, PvuII, RsrII, SacI, SacII, SapI, SbfI, ScaI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SphI, StuI, SwaI, Tth111I, XmaI, XmnI
Name Recognition sequence Cut positions
AatII GACGT|C 4594, 5694
AccI GT|[AC][TG]AC 493, 1252, 4597, 5691
AccII(FnuDII) CG|CG 1076
AciI C|CGC 4843, 6396
AflII C|TTAAG 1980, 2804
AflIII A|CPuPyGT 83, 1248, 3721, 4526, 5428
AhdI GACNNN|NNGTC 5753
AluI AG|CT 178, 185, 465, 505, 768, 875, 955, 1551, 2438, 2833, 2931, 3573, 3848, 4325, 4421, 4694, 4778, 6575
ApoI Pu|AATTPy 67, 222, 230, 476, 699, 850, 1615, 1951, 1961, 2024, 2135, 2688, 3290, 3752, 3780, 4470, 4495, 5070, 5385, 5973, 6022, 6045, 6514, 6543
AseI AT|TAAT 171, 1516, 2751, 3118, 3447, 3467, 3518, 3537
AvaI C|PyCGPuG 4462
AvaII G|G[AT]CC 1323, 1532, 2463, 3219, 5754, 5775, 5954
BclI T|GATCA 4201, 5098
BfaI C|TAG 93, 176, 180, 187, 873, 1528, 2075, 2427, 2436, 2831, 3565, 3638, 3696, 4498, 4612, 4639, 4692, 5027, 5563, 5697, 5962
BglII A|GATCT 842, 2772, 3636
BlpI GC|TNAGC 4687
BsaAI PyAC|GTPu 580, 1255
BsaBI GATNN|NNATC 600, 4883, 4938
BsaHI GPu|CGPyC 20, 4594, 5459, 5694
BsaJI C|CNNGG 720, 4589, 5322
BsaWI [AT]|CCGG[AT] 2485, 4363, 4533
BsiEI CGPuPy|CG 4302
BsiHKAI G[AT]GC[AT]|C 2828
BsiWI C|GTACG 4229
BslI CCNNNNN|NNGG 508, 2284, 4902, 6149
BsmI GAATGCN| 2970
BsoBI C|PyCGPuG 4462
Bsp1286I G[GAT]GC[CAT]|C 2828
BspDI AT|CGAT 3880
BspHI T|CATGA 3610, 6505, 6613
BsrFI Pu|CCGGPy 739, 2991, 4304, 6143
BssKI |CCNGG 4772
BssSI C|TCGTG 4425
BstBI TT|CGAA 3293, 4090
BstEII G|GTNACC 6233
BstF5I GGATGNN| 654, 710, 1397, 2592
BstUI CG|CG 1076
BstXI CCANNNNN|NTGG 4558
BstYI Pu|GATCPy 842, 2096, 2772, 3636, 4450, 4933
BstZ17I GTA|TAC 493, 1252
Bsu36I CC|TNAGG 562
BtgI C|CPuPyGG 720
BtsI GCAGTGNN| 6116
Cac8I GCN|NGC 4574, 4777
Cfr10I [AG]|CCGG[TC] 739, 2991, 4304, 6143
ClaI AT|CGAT 3880
DdeI C|TNAG 468, 503, 561, 648, 1914, 2929, 3257, 3341, 4601, 4686, 4760, 4963, 4995, 5480, 5845, 6147
DpnI GA-CH3|TC 90, 293, 800, 841, 2095, 2771, 3635, 3647, 3877, 4200, 4243, 4449, 4883, 4932, 4959, 5097, 5234, 6456, 6507
DpnII |GATC 90, 293, 800, 841, 2095, 2771, 3635, 3647, 3877, 4200, 4243, 4449, 4883, 4932, 4959, 5097, 5234, 6456, 6507
DraI TTT|AAA 370, 847, 2267, 5120, 5782
DraIII CACNNN|GTG 4560
DrdI GACNNNN|NNGTC 4543
EaeI Py|GGCCPu 2993, 4302
EagI C|GGCCG 4302
EcoNI CCTNN|NNNAGG 2284
EcoO109I PuG|GNCCPy 1533, 2464
EcoRI G|AATTC 67, 4495, 5070, 6022
Fnu4HI GC|NGC 1628, 1797, 3976, 4270, 4800, 4837, 5496
HaeII PuGCGC|Py 736
HaeIII GG|CC 1403, 2727, 2992, 3337, 4301, 4893
HhaI GCG|C 677, 735, 1496
HinP1I G|CGC 677, 735, 1496
HincII GTPy|PuAC 2382, 3388, 3619, 4597
HindIII A|AGCTT 2932
HinfI G|ANTC 440, 568, 595, 817, 2274, 3037, 3503, 4969, 5127, 5484, 6164, 6387, 6607, 6616
HpaI GTT|AAC 3388
HpaII C|CGG 70, 738, 2484, 2990, 4303, 4362, 4446, 4532, 4681, 4771, 6142
Hpy188I TCN|GA 3461, 3650, 3956, 4203, 4333, 4476, 4489, 4648, 4759, 5804, 6510
Hpy99I CG[AT]CG| 3202, 4253, 4487, 4544, 4595
HpyCH4III ACN|GT 784, 1179, 1287, 1558, 1848, 1907, 2360, 2596, 2791, 3828, 4279, 4432, 4664, 4862, 4926, 5687, 6362, 6377
HpyCH4IV A|CGT 1, 283, 579, 968, 1254, 1444, 3214, 3325, 3605, 4226, 4254, 4524, 4536, 4593, 5623, 5693, 6130, 6186
HpyCH4V TG|CA 337, 728, 1144, 1357, 1388, 1652, 1721, 1825, 1891, 2313, 2327, 2970, 2998, 4643, 4835, 5169, 5388, 5494, 5662, 5909, 6473
MboI |GATC 90, 293, 800, 841, 2095, 2771, 3635, 3647, 3877, 4200, 4243, 4449, 4883, 4932, 4959, 5097, 5234, 6456, 6507
MfeI C|AATTG 2759, 2823, 3529
MseI T|TAA 40, 57, 170, 355, 360, 369, 413, 622, 750, 837, 846, 983, 1007, 1345, 1377, 1410, 1450, 1515, 1554, 1611, 1618, 1669, 1979, 1994, 2149, 2192, 2266, 2422, 2445, 2611, 2746, 2750, 2785, 2803, 2857, 2872, 2918, 2934, 3083, 3117, 3286, 3387, 3446, 3466, 3483, 3517, 3536, 3669, 3917, 4936, 5010, 5119, 5145, 5205, 5346, 5377, 5670, 5781, 5810, 5833, 5839, 6269, 6340
MslI CAPyNN|NNPuTG 1272, 1570, 2335, 6063, 6643
MspI C|CGG 70, 738, 2484, 2990, 4303, 4362, 4446, 4532, 4681, 4771, 6142
MwoI GCNNNNN|NNGC 924, 2956, 4702, 4843, 5005
N.BstNBI GAGTCNNNN|N 822, 2279, 4974
NciI CC|[CG]GG 4772
NcoI C|CATGG 720
NdeI CA|TATG 5615
NlaIII CATG| 82, 249, 303, 318, 448, 453, 488, 719, 1142, 1247, 1266, 1359, 1751, 1827, 2955, 3000, 3023, 3609, 3720, 4397, 4415, 4793, 5284, 5427, 6063, 6453, 6504, 6612
NlaIV GGN|NCC 2464, 5776
NsiI ATGCA|T 1145, 1358, 2314, 2328
NspI PuCATG|Py 83, 304, 319, 1248, 1360, 2956, 3001, 3721, 5428
PacI TTAAT|TAA 2750
PaeR7I C|TCGAG 4462
PciI A|CATGT 83, 1248, 3721, 5428
PpuMI PuG|G[AT]CCPy 1533, 2464
PsiI TTA|TAA 481, 939, 3748, 3861, 3935, 5177, 5723, 6251, 6299, 6485
RsaI GT|AC 551, 973, 1000, 1263, 1414, 1574, 2593, 3562, 4228, 4378, 4511, 4734, 4864
SalI G|TCGAC 4597
Sau3AI |GATC 90, 293, 800, 841, 2095, 2771, 3635, 3647, 3877, 4200, 4243, 4449, 4883, 4932, 4959, 5097, 5234, 6456, 6507
Sau96I G|GNCC 1323, 1403, 1532, 2463, 3219, 5754, 5775, 5954
ScrFI CC|NGG 4772
SfcI C|TPuPyAG 959, 1549, 1633, 2521, 2550, 5689, 6571
SmlI C|TPyPuAG 299, 1980, 2804, 4454, 4462
SnaBI TAC|GTA 1255
SpeI A|CTAGT 5028
SspI AAT|ATT 1843, 1988, 2108, 2179, 2657, 2938, 3444, 5061, 5134, 5585, 6633
StyI C|C[AT][AT]GG 720, 5322
Taqƒ¿I T|CGA 637, 724, 791, 1283, 3203, 3292, 3879, 4089, 4251, 4461, 4596, 4899
TfiI G|A[AT]TC 440, 568, 595, 3037, 3503, 5127, 5484, 6164, 6387, 6616
TliI C|TCGAG 4462
TseI G|C[AT]GC 1797, 3976, 4837, 5496
Tsp45I |GT[CG]AC 2625, 3108, 4264, 4282, 4366, 4790, 5314, 5703, 5790, 6232, 6365, 6380
Tsp509I |AATT 32, 66, 128, 172, 221, 229, 312, 357, 362, 475, 572, 624, 698, 712, 849, 944, 1005, 1024, 1035, 1053, 1094, 1166, 1221, 1308, 1380, 1489, 1595, 1614, 1671, 1681, 1832, 1924, 1950, 1960, 2001, 2023, 2047, 2063, 2134, 2147, 2400, 2415, 2443, 2451, 2478, 2687, 2696, 2734, 2748, 2758, 2778, 2822, 3013, 3284, 3289, 3330, 3377, 3464, 3474, 3485, 3528, 3711, 3744, 3751, 3779, 4085, 4102, 4132, 4469, 4494, 5069, 5106, 5122, 5384, 5392, 5399, 5408, 5665, 5821, 5972, 6021, 6044, 6070, 6080, 6262, 6275, 6292, 6338, 6476, 6487, 6513, 6542
TspRI NNCA[CG]TGNN| 785, 1697, 2361, 2998, 3384, 4000, 4282, 6116, 6365
XbaI T|CTAGA 94, 5564, 5698
XcmI CCANNNNN|NNNNTGG 1117, 4561
XhoI C|TCGAG 4462


Click here to view TAIR data

>AT2G28200 genomic sequence (4172-5032,) length:6657
aaacgtaggt atatagaagg acgccacgaa ctcaattatt gttaaaacaa 
50
ataagttctt aaatatgaat tccggctcta aaacatgtat tgatctagat 
100
tactatattt gaagaatgag tggaataaaa attgttttct ccatttatct 
150
atgtgttaga tttttattct attaattcta gctagtagct agtgatgaca 
200
ttttactaaa agtttactga aaaattcaaa aattcagtat atatatgtaa 
250
catgaaaata aatgatagta tagaatagtt ttttacgttg ctttgatcct 
300
tgagcatgtg ataaattgac atgcgtataa ctattagttg caaacctaaa 
350
ctcactttaa tttaattatt ttaaaaataa gaaacactaa ataggagtat 
400
atatatatgt ttggttaaat atcatccatt atttttggaa gaatctcgtc 
450
atgccatgta tagtttagct tagacaaatt ttataacgcc atgtatacct 
500
taccttagct tgggacaaaa aaatcaaacc gaaataactg aaccgaaccg 
550
aagtacctta ccttaggtga atcaattagc acgtatagtt tagaagattc 
600
ttatctaacg ccatctttta tatttaattt ttgttctttc gaccaactct 
650
aaggatgttt ggttatgata atataaaagc gcaaacaact tgatggataa 
700
attcaaatgg atgaattacc catggtcgat gcaaaagcgc cggtaaagtt 
750
gttaaaacta tcaaccataa gctcgttccc atccactgtg tttcgagtgc 
800
tgatcttatt tgggaatgag tccatcctta tcccttgttt aagatcttta 
850
aattcataat cacttggttt cgtcctagct atttttccac ttgctttatt 
900
ttttttatgt tttttttagc aaaaacggct ttttcttctt ataataattt 
950
ttatagagct atagtctata cgttgtacca tattttaaca tttcaccaaa 
1000
tgtactaatt aaaacagaga aatccaattt atgtaaaatt atagagagga 
1050
tactaattta tgttttagga aatataacgc ggtgagtaaa aaactaattg 
1100
cttttagcca cacatctgtt ggtgtcgttg ctttacgcaa catcatgcat 
1150
ctcttctatt gtctcctaat tttttattta ctgttttttt ttcttgttta 
1200
tgattagcaa ccaaatcatt tcaattattt cctcattatg tatctaaaca 
1250
tgtatacgta atgagtacat ggttgtgtat cgtctcgact gtaaaactga 
1300
aaccgatata attagttttg ttaggaccac taaatacata atggttttaa 
1350
tatgaatatg catgtgtgag tgtatctatt aaattgttgt gcaaaggatg 
1400
tgagggccac tttaagtaca agacaataag gtttggaata gcccaacgtg 
1450
attaagagta acttcttcca atcatttcat cgtgttatag aattattgcg 
1500
cctaatcaaa tctttattaa taaaaataac taggtccttt cttttatact 
1550
atagcttaac ggtagcattt atatggtacg acttactaat aagtctaatt 
1600
tctctatcaa gattaaattt taatacttgc ggctatagaa aaagtaaata 
1650
taatgcaaaa tcgtaatcat ttaattggta taaattggta tattccagtg 
1700
gcaagttgta acacttttta gttgcataca catacatcaa tacaaaaaca 
1750
aacatgagta tttatagtcc atagtggcac acatattata tatgggagca 
1800
gcaatcccta tgtaaagtca aaatgttgca tgaaattagc aaaatattac 
1850
ggtgaaggaa agaagtgatg ggttttgtgt atgtaacata cttgcatccc 
1900
acacataacc gttccttagc ccaaaaatta tgttatatat atccacttga 
1950
aaatttatat aaatttctat accatttgtc ttaagagaat attttttaat 
2000
ataattatta ttccttcaaa aatgaattta ctctaacatt tcttttccaa 
2050
tttgaagtaa agacaattat atttttctag tcaaaatcca tatttagatc 
2100
ctataaaaat atttattatg aaaaatataa accaaaattt gattgtaaaa 
2150
ttaaagtaag tgatatgatt atcatactaa tatttagaag tggttaaaaa 
2200
taaatatatt ttattattat tcttctttct ttttcttttc tttttttttg 
2250
acagggattt ttgtttttta aaaagagtcc ttgacaagga ttttgtggtg 
2300
tggtttagcc actatgcatt ataccttatg catagatatg ggttcaagcc 
2350
tcaatctccc actgtgagac tttgaaagta tgttgacaaa aaaaggtgta 
2400
taatttttcc agaataaatt attttaatct agtttgccta gctaaattaa 
2450
ataattattt tgaggtccct aaacttcata attttccggt ctctcaatct 
2500
tgacataact tattctctgt ctatagtttt tttttttttg aacttttctc 
2550
tatagattac ttattctata atctataaag tattattttt ggatgtaccg 
2600
tgtaaactcg ttttaatggt tagttgtcac ttgtccatac aaaaatgtaa 
2650
cattccaata tttgacaata aagtaatgtt acataaaaaa tttctataat 
2700
ttgagtatgt tttttttttt tttttgtcgg cctataattt gagtatgtta 
2750
attaatctca attgtaaaaa tagatctcta attatcttaa aactgtttcc 
2800
agtcttaaga ttagtagata accaattgag cactagcttt caactctctc 
2850
tacaaatgtt aatcaagata tgattaaaaa atgagagaaa aaaaaaagtc 
2900
gtggtgttgt ctcttcacat taacaaagac taagcttaat attgttttta 
2950
gcctaacatg ccaccgatga atgcacctaa tcctataaac accggccact 
3000
gcatgtcgcc tcctaattat gaaccatgta tgtctgtgaa tcattatttc 
3050
cctttgataa tcttattagt atatttcaaa acatttaatc aaaagttttc 
3100
ttgtagtcgt cacgaccatt aataatatgt aatatattct ttttatttgc 
3150
tgtcgtgaac atttttatct ttagttctat ctatttcggt tctcattgaa 
3200
agcgtcgatt tgatgacgtg gacctaaagt gcgtgaaagt aaaacctttg 
3250
ctttgtcctt agaactgaat gttcacactc ccaaaaatta aattcgaaac 
3300
taaataaata aaaacaaata acaaaaacgt gaattggtgg cctaagtgcc 
3350
actcaacact actaatgaac ctttgcctaa ttcagtggtt aactcttcac 
3400
gggtttcact ttccctttta tttctcctac ttttgcttga aacaatatta 
3450
atcattttca ctcggaatta ataacaattc tctgttaatt atggaatatg 
3500
aatgattcaa gagtttgatt aatcacacca attgatatta atatgtttgt 
3550
tattagaaag tatgtactag aagaagctgt ctaatacaat actaataaat 
3600
gaaaaaacgt catgaagggt tgacttctgg tatatagatc taggtagaga 
3650
tcagattttg aagatatgga ttaaaagtag atacaacaga acagaaacta 
3700
gaaaagaaga aaaattattt acatgtcata tttttttcat cattgaatta 
3750
taaatttgtt gattgatttt attgttatgg aatttggcag agaaaacgca 
3800
gaagtgtcag gtaatgggta tagagtgaac cgtcaaaatg ttattggtta 
3850
gctaaaaaca ttataataat gtaaagtgga tcgatgtgta aaatcttttg 
3900
tggagtaaac taaaaagatt aacaaccacc aaacttataa cctctctctt 
3950
tttttttccg ataaatatat atataagcag ccccaccatc gtcttcttca 
4000
ctgcctctct tctctcttct cttctgtctc tctcttgtta gttcactcca 
4050
cataataaac accaaagatt tcattctctt ctccataatt tcgaagtttc 
4100
ttgaattggg tttgtttctt gatttgtttc ttgaattggg ttttggtctt 
4150
cttttcttac tatatttgga tATGATGATG GGTCAAGATG AGGTTGGGAG 
4200
TGATCAGACG CAAATCATAA AAGGGAAACG TACGAAGCGA CAAAGATCGT 
4250
CTTCGACGTT TGTGGTGACG GCGGCGACAA CAGTGACTTC AACAAGTTCA 
4300
TCGGCCGGTG GAAGTGGAGG AGAAAGAGCT GTTTCAGATG AATACAACTC 
4350
GGCGGTTTCG TCTCCGGTGA CTACTGATTG TACGCAAGAA GAAGAAGACA 
4400
TGGCGATTTG TCTCATCATG TTAGCTCGTG GGACAGTTCT TCCATCGCCG 
4450
GATCTCAAGA ACTCGAGAAA AATTCATCAG AAGATTTCGT CGGAGAATTC 
4500
TAGTTTCTAT GTGTACGAGT GTAAAACGTG TAACCGGACG TTTTCGTCGT 
4550
TCCAAGCACT TGGTGGACAC AGAGCGAGCC ACAAGAAGCC GAGGACGTCG 
4600
ACTGAGGAAA AGACTAGACT ACCCCTGACG CAACCCAAGT CTAGTGCATC 
4650
AGAAGAAGGG CAAAACAGTC ATTTCAAAGT TTCCGGCTCA GCCCTAGCTT 
4700
CACAGGCAAG TAACATCATC AACAAGGCAA ACAAAGTACA CGAGTGTTCC 
4750
ATCTGCGGTT CTGAGTTCAC TTCCGGGCAA GCTCTCGGTG GTCACATGAG 
4800
GCGGCACAGG ACAGCCGTAA CCACGATTAG CCCCGTTGCA GCCACCGCAG 
4850
AAGTAAGCAG AAACAGTACA GAGGAAGAGA TTGAGATCAA TATAGGCCGT 
4900
TCGATGGAAC AGCAGAGGAA ATATCTACCG TTGGATCTTA ATCTACCAGC 
4950
ACCAGAAGAT GATCTAAGAG AGTCAAAGTT TCAAGGGATA GTATTCTCAG 
5000
CAACACCAGC GTTAATAGAT TGTCATTACT AGttgttttt tttactacat 
5050
aatatgatga aatatttgtg aattcttctt acttactact atattgttga 
5100
tcattggaat tatttttttt ttaaattgaa tcaaatatta tcatttttaa 
5150
gaaaagagga aaatgaaatg tgcaagttat aatgaaagag aggaatatag 
5200
tgggagttaa gtaaagggtt gtgtgatagt tagatgatct acttgttgaa 
5250
gtaagaatag tttgagtaag caagtggtta gtgttcatgg ttgcctttca 
5300
ttcacgaaaa gtaagtgact tccaaggcat cttttctttc cctcttttta 
5350
aggtattttt ttgttatttt tattttattt aacaaaattt gcaaattatg 
5400
aattactaaa attgtttttt ttcttgaaca tgtgaagcaa ctatttgtat 
5450
tacttgaaga cgcctctttt cccacgatta cttagattct ccgtttgcag 
5500
ccaaacgctg tatcgtggtg tggtgttctg cgttggcaac aaaatatgtc 
5550
atagcataaa ctatctagaa aaaaagatta ggaaaatatt tccaatataa 
5600
atcaactttt tggtcatatg ggtaacgtat gactttggaa gacgagagtt 
5650
caaactttct ttctgcaatt tttaactatg ataagttact gtagacgtct 
5700
agagtgacaa aactatttga ttttataagg ttatggagat tagtttggac 
5750
ttttggtcca atagacatat atgttggtcc ctttaaaagt gtgacaataa 
5800
aatatctgat tttaatagtt tcaattttta ttatttaaga ttaaacttag 
5850
aatacacctg attattagaa aagaaaactc taataaaata tctaactatt 
5900
tttgttactt tgcagagata ataataatgt ctctgttacg actttatgct 
5950
ataaggacca atgctagttt gagaatttcc tcatcattct catttcatta 
6000
ccattttgta tatacgagtt tgaattcata ttttcaaaaa aagaaaattt 
6050
tagaaaaaca ttatcatgta aaattattgt gaattgatac aaaaataata 
6100
aataaataga aaggcagtgg acacgagatg gacgtggtga tgaccggctt 
6150
agggtttggc aagagaatca caaccacaac taaatagacg tggattaggt 
6200
tcttctttgg ttttgggttg ttattttttc tggtcaccac atttacactt 
6250
ttataaatat atgaattatt ttaatcaatt atgacagact aacaattatt 
6300
ataacagaac agaaaaagaa aaaagagcag aaatcaaata attaaagaaa 
6350
ggaaaaagat aaacagtgac agcagaaaca gtcacaagat tcactcaccg 
6400
cttcactcct tgcttccagt ccttctcttt taggattatt cttgctgttg 
6450
tatccatgat ccaactttta ttcttgcaat tattttataa ttattcttgt 
6500
tctctcatga tctgaatttc tttatacaac ttctattttt aggaatttat 
6550
tttatagatt agtgaaaaaa ctatagagct acaatgaaac taaaggtgga 
6600
taccattgac tctcatgatt cgctaaatca ctaatattca tatatatgta 
6650
atatata
6700