fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT2G28510 AtDof2,1 Dof-type zinc finger DNA-binding family protein (.1)

>AT2G28510.1 CDS map

>>Show genomic map




Uncut enzymes: AatII, Acc65I, AccI, AccII(FnuDII), AfeI, AflII, AflIII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, ApoI, AscI, AvaI, AvaII, AvrII, BaeI, BalI, BanI, BanII, BbsI, BbvI, BcgI, BciVI, BglI, BglII, BlpI, BmrI, BpmI, BsaAI, BsaHI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsiHKAI, BsiWI, BsmAI, BsmBI, BsmFI, BsoBI, Bsp1286I, BspDI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrFI, BsrGI, BsrI, BssHII, BssSI, BstAPI, BstBI, BstEII, BstNI, BstUI, BstXI, BstZ17I, Bsu36I, BtrI, BtsI, Cac8I, Cfr10I, ClaI, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, Fnu4HI, FokI, FseI, FspI, HaeII, HaeIII, HgaI, HhaI, HinP1I, HincII, HindIII, HpaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MslI, MspA1I, MwoI, N.BstNBI, NaeI, , NarI, NdeI, NgoMIV, NheI, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PspGI, PspOMI, PstI, PvuI, PvuII, RsrII, SacI, SacII, SalI, SapI, Sau96I, SbfI, ScaI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, StuI, SwaI, TliI, TseI, Tsp45I, TspRI, Tth111I, XbaI, XcmI, XhoI, XmaI, XmnI
Name Recognition sequence Cut positions
AccIII(BspMII) T|CCGGA 604
AciI C|CGC 768
AclI AA|CGTT 268
AluI AG|CT 136, 316, 478, 806
AseI AT|TAAT 349
BamHI G|GATCC 3
BbvCI CC|TCAGC 315
BclI T|GATCA 417
BfaI C|TAG 723, 862
BsaBI GATNN|NNATC 159
BsaJI C|CNNGG 748
BsaWI [AT]|CCGG[AT] 604, 760, 783
BslI CCNNNNN|NNGG 279, 495
BsmI GAATGCN| 393
BspEI T|CCGGA 604
BssKI |CCNGG 795
BstF5I GGATGNN| 657, 819
BstYI Pu|GATCPy 3, 548
BtgI C|CPuPyGG 748
DdeI C|TNAG 314, 713
DpnI GA-CH3|TC 2, 303, 362, 416, 428, 509, 547, 791
DpnII |GATC 2, 303, 362, 416, 428, 509, 547, 791
HinfI G|ANTC 159, 719, 765
HpaII C|CGG 603, 759, 771, 782, 795
Hpy188I TCN|GA 233, 371, 553, 714
Hpy99I CG[AT]CG| 275, 291
HpyCH4III ACN|GT 565
HpyCH4IV A|CGT 267
HpyCH4V TG|CA 221
MboI |GATC 2, 303, 362, 416, 428, 509, 547, 791
MseI T|TAA 348, 380
MspI C|CGG 603, 759, 771, 782, 795
NciI CC|[CG]GG 795
NcoI C|CATGG 748
NlaIII CATG| 747
NlaIV GGN|NCC 3
PsiI TTA|TAA 573
RsaI GT|AC 255, 567, 779
Sau3AI |GATC 2, 303, 362, 416, 428, 509, 547, 791
ScrFI CC|NGG 795
SfcI C|TPuPyAG 195
SmlI C|TPyPuAG 476
StyI C|C[AT][AT]GG 748
Taqƒ¿I T|CGA 292
TfiI G|A[AT]TC 159, 719, 765
Tsp509I |AATT 123, 143, 350, 382


Click here to view TAIR data

>AT2G28510.1 length:867
ATGGATCCTG AACAGGAAAT CTCAAACGAG ACTTTGGAAA CTATATTGGT 
50
AAGTTCAACA AAAGGAAGCA ATAATAACAA TAAGAAAATG GAAGAAGAAA 
100
TGAAGAAGAA AGTATCAAGA GGAGAATTAG GAGGTGAAGC TCAAAATTGT 
150
CCAAGATGTG AATCTCCAAA CACAAAGTTT TGTTACTACA ACAACTATAG 
200
TCTCTCACAA CCTCGTTACT TCTGCAAATC TTGTCGGAGA TATTGGACTA 
250
AAGGCGGTAC TCTTCGTAAC GTTCCCGTCG GTGGTGGTTG CCGTCGAAAC 
300
AAACGATCCT CTTCCTCAGC TTTCTCCAAG AACAACAACA ATAAGTCTAT 
350
TAATTTCCAT ACTGATCCAC TTCAGAACCC TTTAATTACG GGAATGCCAC 
400
CATCATCTTT TGGTTATGAT CACTCCATTG ATCTCAACCT CGCTTTCGCT 
450
ACTCTCCAAA AGCATCATTT ATCCTCTCAA GCTACTACGC CTTCTTTTGG 
500
GTTTGGAGGT GATCTTTCTA TTTATGGAAA CTCAACGAAT GATGTAGGGA 
550
TCTTCGGAGG GCAAAACGGT ACTTATAACA ATAGTTTGTG TTATGGGTTT 
600
ATGTCCGGAA ATGGTAATAA TAATCAAAAT GAAATCAAGA TGGCTTCTAC 
650
ATTGGGGATG TCTTTGGAAG GAAACGAGAG AAAGCAAGAG AATGTGAACA 
700
ATAACAATAA TAACTCAGAG AATCCTAGCA AGGTGTTCTG GGGGTTTCCA 
750
TGGCAGATGA CCGGAGATTC CGCCGGAGTT GTACCGGAGA TTGATCCCGG 
800
AAGGGAAAGC TGGAATGGGA TGGTTTCATC TTGGAATAAT GGTTTACTCA 
850
ACACTCCTTT GGTCTAG
900

>AT2G28510.1 longest ORF length:288
MDPEQEISNE TLETILVSST KGSNNNNKKM EEEMKKKVSR GELGGEAQNC 
50
PRCESPNTKF CYYNNYSLSQ PRYFCKSCRR YWTKGGTLRN VPVGGGCRRN 
100
KRSSSSAFSK NNNNKSINFH TDPLQNPLIT GMPPSSFGYD HSIDLNLAFA 
150
TLQKHHLSSQ ATTPSFGFGG DLSIYGNSTN DVGIFGGQNG TYNNSLCYGF 
200
MSGNGNNNQN EIKMASTLGM SLEGNERKQE NVNNNNNNSE NPSKVFWGFP 
250
WQMTGDSAGV VPEIDPGRES WNGMVSSWNN GLLNTPLV
300