fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT2G29580 MAC5B MOS4-associated complex subunit 5B, CCCH-type zinc fingerfamily protein with RNA-binding domain (.1)

>AT2G29580.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, EcoRI, EcoRV, HindIII, HpaI, KpnI, NheI, NotI, PacI, PvuII, SalI, SmaI, SpeI, XbaI
Name Recognition sequence Cut positions
BamHI G|GATCC 1399
BglII A|GATCT 134
NcoI C|CATGG 750, 1272
NdeI CA|TATG 1223
PstI CTGCA|G 836, 1385
SacI GAGCT|C 476, 844
StyI C|C[AT][AT]GG 750, 1272
XhoI C|TCGAG 708, 971


Click here to view TAIR data

>AT2G29580.1 length:1452
ATGGCGCATA GAATACTGAG AGATCACGAG GCTGATGGAT GGGAACGTTC 
50
TGATTTCCCA ATCATCTGTG AGTCTTGTCT CGGTGACAAT CCTTACGTGA 
100
GAATGACAAA GGCGAATTAC GATAAAGAGT GTAAGATCTG TACCCGGCCT 
150
TTCACGGTTT TCAGATGGCG ACCTGGTAGG GATGCGAGAT ACAAGAAGAC 
200
TGAAGTTTGT CAGACATGTT GCAAGTTGAA GAATGTGTGC CAAGTTTGTC 
250
TCTTGGATCT TGAGTATGGT CTTCCAGTTC AGGTCAGAGA CACGGCGCTC 
300
AACATTAGTA CTCATGATTC TATCCCAAAA AGTGATGTGA ACCGAGAGTT 
350
TTTCGCTGAA GAGCATGATC GAAAGACGAG AGCTGGACTA GATTATGAGT 
400
CTTCTTTTGG GAAGATTCGG CCCAACGATA CCATTCGTAT GCTTCAAAGG 
450
ACAACGCCTT ACTACAAAAG GAACCGAGCT CATATTTGTA GTTTCTTCAT 
500
TAGGGGAGAG TGTACAAGAG GTGATGAGTG TCCATACCGT CATGAGATGC 
550
CTGAAACAGG AGAGTTATCC CAGCAGAACA TTAAAGACCG TTATTATGGT 
600
GTAAACGATC CAGTTGCGTT GAAGTTACTT GGCAAGGCTG GGGAGATGGG 
650
TACTTTGGAA TCTCCAGAGG ATCAAAGCAT CAGAACGCTT TATGTTGGTG 
700
GGCTAAACTC GAGAGTCCTT GAGCAAGACA TTCGTGATCA ATTCTACGCC 
750
CATGGAGAAA TCGAATCCAT CAGAATCTTG GCTGAGAAAG CATGTGCGTT 
800
TGTCACTTAC ACAACCCGAG AAGGAGCAGA GAAAGCTGCA GAAGAGCTCA 
850
GTAACAGGCT AGTTGTCAAC GGTCAGAGGC TAAAACTCAC ATGGGGAAGA 
900
CCTCAGGTTC CCAAACCTGA TCAAGATGGT TCTAACCAAC AGGGCAGTGT 
950
GGCTCATAGT GGTTTACTAC CTCGAGCAGT TATATCTCAG CAACAGAATC 
1000
AACCTCCACC AATGCTACAA TACTATATGC ACCCACCACC ACCACAACCT 
1050
CCTCATCAAG ACAGACCATT TTACCCATCA ATGGACCCTC AGAGAATGGG 
1100
TGCAGTTAGT TCGTCCAAAG AAAGCGGTTC AAGCACCAGT GACAACAGAG 
1150
GAGCTTCTTC TTCTTCTTAC ACTATGCCAC CACATGGCCA CTATCCTCAG 
1200
CACCAGCCAT ACCCGCCACC ATCATATGGA GGATATATGC AACCACCTTA 
1250
CCAGCAGTAT CCTCCTTACC ACCATGGCCA TTCACAACAA GCTGATCATG 
1300
ATTACCCACA ACAACCAGGT CCCGGTTCAA GGCCTAATCC TCCACATCCA 
1350
AGTTCAGTCT CTGCTCCACC ACCTGACTCT GTGTCTGCAG CACCTTCAGG 
1400
ATCCTCTCAG CAATCTGCTG ATGCTGCTGT TACTACTGGT TCGTCTCAAT 
1450
AG
1500

>AT2G29580.1 longest ORF length:483
MAHRILRDHE ADGWERSDFP IICESCLGDN PYVRMTKANY DKECKICTRP 
50
FTVFRWRPGR DARYKKTEVC QTCCKLKNVC QVCLLDLEYG LPVQVRDTAL 
100
NISTHDSIPK SDVNREFFAE EHDRKTRAGL DYESSFGKIR PNDTIRMLQR 
150
TTPYYKRNRA HICSFFIRGE CTRGDECPYR HEMPETGELS QQNIKDRYYG 
200
VNDPVALKLL GKAGEMGTLE SPEDQSIRTL YVGGLNSRVL EQDIRDQFYA 
250
HGEIESIRIL AEKACAFVTY TTREGAEKAA EELSNRLVVN GQRLKLTWGR 
300
PQVPKPDQDG SNQQGSVAHS GLLPRAVISQ QQNQPPPMLQ YYMHPPPPQP 
350
PHQDRPFYPS MDPQRMGAVS SSKESGSSTS DNRGASSSSY TMPPHGHYPQ 
400
HQPYPPPSYG GYMQPPYQQY PPYHHGHSQQ ADHDYPQQPG PGSRPNPPHP 
450
SSVSAPPPDS VSAAPSGSSQ QSADAAVTTG SSQ
500