fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT2G30130 PCK1, LBD12, ASL5 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1)

>AT2G30130.1 CDS map

>>Show genomic map




Uncut enzymes: AatII, Acc65I, AccIII(BspMII), AciI, AclI, AfeI, AflIII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvaI, AvrII, BaeI, BalI, BamHI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BglI, BglII, BlpI, BmrI, BpmI, BsaAI, BsaBI, BsaHI, BsaI, BsaJI, BsaXI, BseRI, BsgI, BsiEI, BsiHKAI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, Bsp1286I, BspDI, BspEI, BspHI, BspMI, BsrBI, BsrDI, BsrFI, BsrGI, BsrI, BssHII, BssSI, BstAPI, BstBI, BstEII, BstF5I, BstNI, BstXI, BstZ17I, Bsu36I, BtgI, BtrI, Cfr10I, ClaI, DdeI, DraI, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HaeIII, HgaI, HhaI, HinP1I, HincII, HpaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MspA1I, N.BstNBI, NaeI, , NarI, NcoI, NdeI, NgoMIV, NheI, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspGI, PspOMI, PstI, PvuI, PvuII, RsrII, SacI, SacII, SalI, SapI, SbfI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, StuI, StyI, SwaI, TliI, Tsp45I, Tth111I, XbaI, XcmI, XhoI, XmaI, XmnI
Name Recognition sequence Cut positions
AccI GT|[AC][TG]AC 238
AccII(FnuDII) CG|CG 187
AflII C|TTAAG 556
AluI AG|CT 36, 162, 181, 285, 397
ApoI Pu|AATTPy 106
AvaII G|G[AT]CC 6
BanI G|GPyPuCC 133
BfaI C|TAG 299, 380
BsaWI [AT]|CCGG[AT] 234
BslI CCNNNNN|NNGG 240
BspT107I(HgiCI) G|G[TC][AG]CC 133
BssKI |CCNGG 9
BstUI CG|CG 187
BstYI Pu|GATCPy 231
BtsI GCAGTGNN| 306
Cac8I GCN|NGC 136
DpnI GA-CH3|TC 12, 95, 230
DpnII |GATC 12, 95, 230
DraIII CACNNN|GTG 23
Fnu4HI GC|NGC 244, 284, 511
HindIII A|AGCTT 37
HinfI G|ANTC 320, 564
HpaII C|CGG 9, 233
Hpy188I TCN|GA 290, 332
Hpy99I CG[AT]CG| 45
HpyCH4III ACN|GT 356, 482
HpyCH4IV A|CGT 141
HpyCH4V TG|CA 55, 65, 156, 294, 326, 336, 431, 519, 525, 531, 537, 543
MboI |GATC 12, 95, 230
MseI T|TAA 555, 577
MslI CAPyNN|NNPuTG 21, 334
MspI C|CGG 9, 233
MwoI GCNNNNN|NNGC 145, 293, 344
NciI CC|[CG]GG 9
NlaIII CATG| 21, 469
NlaIV GGN|NCC 7, 133
RsaI GT|AC 371
Sau3AI |GATC 12, 95, 230
Sau96I G|GNCC 6
ScaI AGT|ACT 372
ScrFI CC|NGG 9
SmlI C|TPyPuAG 311, 556
Taqƒ¿I T|CGA 43
TfiI G|A[AT]TC 320, 564
TseI G|C[AT]GC 244, 284, 511
Tsp509I |AATT 105
TspRI NNCA[CG]TGNN| 306


Click here to view TAIR data

>AT2G30130.1 length:582
ATGGGCGGTC CCGGATCATC ACCATGTGCT TCGTGTAAGC TTCTTCGACG 
50
ACGATGTGCA AAAGATTGCA TCTTCGCACC TTATTTTCCT CCTGACGATC 
100
CTCACAAATT CGCCATTGTT CATAAGGTCT TTGGTGCCAG CAACGTCAGC 
150
AAAATGTTGC AGGAGCTACC AGTTCATCAA AGAGCTGACG CGGTGAATAG 
200
TCTGGTTTTT GAAGCAAACG CAAGAGTAAG AGATCCGGTC TACGGCTGCG 
250
TAGGAGCAAT CTCCTACTTA CAAAACCAAG TCTCGCAGCT TCAGATGCAA 
300
CTAGCAGTGG CTCAAGCCGA GATTCTTTGC ATTCAGATGC AAAATGAGCC 
350
AACCTTACAG TCTCATCATC AAGTACTTGA ACTAGACCAA GACCACAAAG 
400
CTCTCTTACT AAACAACAAC AACATCAATA ACTGCAACAC CAACAACAAC 
450
AATAACAACT TTGGTTATGC CATGTCTTCT GGACAGTTCA ACTCTAACTT 
500
TGCCTCACCA AGCAGCATAA TGCAAATGCA GATGCAAATG CAAATGCAAG 
550
ACCCTCTTAA GCAAGAATCT CTTTGGACTT AA
600

>AT2G30130.1 longest ORF length:193
MGGPGSSPCA SCKLLRRRCA KDCIFAPYFP PDDPHKFAIV HKVFGASNVS 
50
KMLQELPVHQ RADAVNSLVF EANARVRDPV YGCVGAISYL QNQVSQLQMQ 
100
LAVAQAEILC IQMQNEPTLQ SHHQVLELDQ DHKALLLNNN NINNCNTNNN 
150
NNNFGYAMSS GQFNSNFASP SSIMQMQMQM QMQDPLKQES LWT
200